SMTL ID : 1vc8.1 (1 other biounit)

Crystal Structure of a T.thermophilus HB8 Ap6A Hydrolase Ndx1-Ap6A Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 5FA: ADENOSINE-5'-PENTAPHOSPHATE(Non-covalent)

5FA.1: 14 residues within 4Å: Chain A: D.21, M.23, F.25, K.30, G.31, H.32, E.46, E.50, Y.66, N.68, P.69, R.74, F.110, E.112 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:H.32, A:E.50, A:Y.66, A:Y.66, A:N.68, A:E.112 Water bridges: A:D.21, A:D.21 Salt bridges: A:K.30, A:K.30, A:K.30, A:H.32, A:H.32, A:H.32, A:R.74, A:R.74 pi-Stacking: A:Y.66, A:F.110, A:F.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwai, T. et al., Crystal Structure of Nudix Protein Ndx1 from Thermus thermophilus HB8 in binary complex with diadenosine hexaphosphate. To be Published

Release Date

2005-04-26

Peptides

Ndx1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ndx1

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