SMTL ID : 1vcj.1

Influenza B virus neuraminidase complexed with 1-(4-Carboxy-2-(3-pentylamino)phenyl)-5-aminomethyl-5-hydroxymethyl-pyrrolidin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x IBA: 4-[(2R)-2-(AMINOMETHYL)-2-(HYDROXYMETHYL)-5-OXOPYRROLIDIN-1-YL]-3-[(1-ETHYLPROPYL)AMINO]BENZOIC ACID(Non-covalent)

IBA.1: 17 residues within 4Å: Chain A: R.39, E.40, D.72, R.73, R.77, W.100, S.101, I.144, R.146, E.149, A.168, E.198, E.199, R.215, N.217, R.297, Y.332 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:D.72, A:R.73, A:W.100, A:I.144, A:A.168 Hydrogen bonds: A:E.40, A:R.73, A:R.77, A:E.198, A:E.199, A:E.199 Salt bridges: A:R.39, A:R.215, A:R.297 IBA.2: 17 residues within 4Å: Chain B: R.39, E.40, D.72, R.73, R.77, W.100, S.101, I.144, R.146, E.149, A.168, E.198, E.199, R.215, N.217, R.297, Y.332 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:D.72, B:R.73, B:W.100, B:I.144, B:A.168 Hydrogen bonds: B:E.40, B:R.73, B:R.77, B:E.198, B:E.199, B:E.199 Salt bridges: B:R.39, B:R.215, B:R.297 IBA.3: 17 residues within 4Å: Chain C: R.39, E.40, D.72, R.73, R.77, W.100, S.101, I.144, R.146, E.149, A.168, E.198, E.199, R.215, N.217, R.297, Y.332 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:D.72, C:R.73, C:W.100, C:I.144, C:A.168 Hydrogen bonds: C:E.40, C:R.73, C:R.77, C:E.198, C:E.199, C:E.199 Salt bridges: C:R.39, C:R.215, C:R.297 IBA.4: 17 residues within 4Å: Chain D: R.39, E.40, D.72, R.73, R.77, W.100, S.101, I.144, R.146, E.149, A.168, E.198, E.199, R.215, N.217, R.297, Y.332 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:D.72, D:R.73, D:W.100, D:I.144, D:A.168 Hydrogen bonds: D:E.40, D:R.73, D:R.77, D:E.198, D:E.199, D:E.199 Salt bridges: D:R.39, D:R.215, D:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lommer, B.S. et al., A benzoic acid inhibitor induces a novel conformational change in the active site of Influenza B virus neuraminidase. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-03-23

Peptides

NEURAMINIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NEURAMINIDASE