SMTL ID : 1vdd.2 (1 other biounit)

Crystal structure of recombinational repair protein RecR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-octamer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.57, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.57, A:C.60, A:C.69, A:C.72 ZN.3: 5 residues within 4Å: Chain B: C.57, I.59, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.57, B:C.60, B:C.69, B:C.72 ZN.5: 4 residues within 4Å: Chain C: C.57, C.60, C.69, C.72 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.57, C:C.69, C:C.72 ZN.7: 4 residues within 4Å: Chain D: C.57, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.57, D:C.60, D:C.69, D:C.72 ZN.10: 4 residues within 4Å: Chain E: C.57, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.57, E:C.60, E:C.69, E:C.72 ZN.12: 5 residues within 4Å: Chain F: C.57, I.59, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.57, F:C.60, F:C.69, F:C.72 ZN.14: 4 residues within 4Å: Chain G: C.57, C.60, C.69, C.72 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.57, G:C.69, G:C.72 ZN.16: 4 residues within 4Å: Chain H: C.57, C.60, C.69, C.72 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.57, H:C.60, H:C.69, H:C.72

10 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 4 residues within 4Å: Chain A: E.87, H.108 Chain C: E.34 Chain E: M.114 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.34, A:E.87 Water bridges: C:E.34 IMD.4: 3 residues within 4Å: Chain B: E.34 Chain D: E.87, H.108 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.108 IMD.6: 1 residues within 4Å: Chain C: E.67 No protein-ligand interaction detected (PLIP) IMD.8: 2 residues within 4Å: Chain B: H.108 Chain D: E.34 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.34 IMD.9: 1 residues within 4Å: Chain D: E.67 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.67 IMD.11: 4 residues within 4Å: Chain A: M.114 Chain E: E.87, H.108 Chain G: E.34 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.34 IMD.13: 3 residues within 4Å: Chain F: E.34 Chain H: E.87, H.108 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:H.108 IMD.15: 1 residues within 4Å: Chain G: E.67 No protein-ligand interaction detected (PLIP) IMD.17: 2 residues within 4Å: Chain F: H.108 Chain H: E.34 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:E.34 IMD.18: 1 residues within 4Å: Chain H: E.67 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:E.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, B.I. et al., Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair. Embo J. (2004)

Release Date

2004-05-18

Peptides

Recombination protein recR: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Recombination protein recR

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