- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.99 Å
- Oligo State
- homo-12-mer
- Ligands
- 20 x CD: CADMIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.11: 4 residues within 4Å:- Chain A: E.128
- Chain B: E.128
- Chain C: E.128
- Ligands: SO4.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.128
NA.12: 3 residues within 4Å:- Chain D: E.128
- Chain E: E.128
- Ligands: SO4.14
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.128
NA.25: 4 residues within 4Å:- Chain G: E.128
- Chain H: E.128
- Chain I: E.128
- Ligands: SO4.27
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:E.128
NA.26: 3 residues within 4Å:- Chain J: E.128
- Chain K: E.128
- Ligands: SO4.28
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:E.128
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.13: 6 residues within 4Å:- Chain A: Q.135, I.139
- Chain B: Q.135
- Chain C: Q.135, I.139
- Ligands: NA.11
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:Q.135, C:Q.135, A:Q.135
SO4.14: 6 residues within 4Å:- Chain D: Q.135, I.139
- Chain E: Q.135
- Chain F: Q.135, I.139
- Ligands: NA.12
4 PLIP interactions:1 interactions with chain E, 2 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: E:Q.135, D:Q.135, D:D.136, F:Q.135
SO4.27: 6 residues within 4Å:- Chain G: Q.135, I.139
- Chain H: Q.135
- Chain I: Q.135, I.139
- Ligands: NA.25
3 PLIP interactions:1 interactions with chain G, 1 interactions with chain H, 1 interactions with chain I- Hydrogen bonds: G:Q.135, H:Q.135, I:Q.135
SO4.28: 6 residues within 4Å:- Chain J: Q.135, I.139
- Chain K: Q.135
- Chain L: Q.135, I.139
- Ligands: NA.26
3 PLIP interactions:1 interactions with chain K, 1 interactions with chain J, 1 interactions with chain L- Hydrogen bonds: K:Q.135, J:Q.135, L:Q.135
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roy, S. et al., X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules. J.Mol.Biol. (2004)
- Release Date
- 2004-06-29
- Peptides
- starvation-induced DNA protecting protein: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.99 Å
- Oligo State
- homo-12-mer
- Ligands
- 20 x CD: CADMIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roy, S. et al., X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules. J.Mol.Biol. (2004)
- Release Date
- 2004-06-29
- Peptides
- starvation-induced DNA protecting protein: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F