SMTL ID : 1vg1.1

GDP-Bound Rab7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.22 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.22, H2O.4, H2O.4, H2O.4, H2O.6

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, N.125, K.126, D.128, L.129, S.155, A.156, K.157 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.16, A:G.18, A:V.19, A:G.20, A:K.21, A:T.22, A:T.22, A:S.23, A:S.23, A:N.125, A:K.126, A:K.126, A:A.156, A:K.157 Water bridges: A:K.21, A:T.22, A:K.126 Salt bridges: A:K.21, A:D.128 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, A. et al., Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease. Cell(Cambridge,Mass.) (2004)

Release Date

2004-07-20

Peptides

Ras-related protein Rab-7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-7

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