SMTL ID : 1vhd.1

Crystal structure of an iron containing alcohol dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 8 residues within 4Å: Chain A: V.118, L.121, Y.122, S.150, L.152, R.160, G.161, C.162 No protein-ligand interaction detected (PLIP) CAC.4: 7 residues within 4Å: Chain B: V.118, L.121, Y.122, S.150, L.152, R.160, C.162 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.152

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: D.191, H.195, H.258, H.272 Ligands: NAP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.191, A:H.195, A:H.258, A:H.272, H2O.10 ZN.5: 5 residues within 4Å: Chain B: D.191, H.195, H.258, H.272 Ligands: NAP.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.191, B:H.195, B:H.258, B:H.272, H2O.19

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 30 residues within 4Å: Chain A: G.38, K.39, S.40, S.41, N.45, E.70, N.71, G.97, G.98, S.99, P.100, D.102, K.105, T.138, T.139, T.142, S.144, T.147, Y.149, I.151, K.159, Y.176, S.179, M.180, L.184, T.188, D.191, H.195, H.272 Ligands: ZN.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.142 Hydrogen bonds: A:K.39, A:S.40, A:S.41, A:S.41, A:S.41, A:N.45, A:E.70, A:E.70, A:N.71, A:G.97, A:G.98, A:S.99, A:S.99, A:S.99, A:D.102, A:T.138, A:T.138, A:T.139, A:K.159, A:K.159 Water bridges: A:S.42, A:S.42, A:D.102, A:T.142, A:S.179 NAP.6: 29 residues within 4Å: Chain B: G.38, K.39, S.40, S.41, N.45, E.70, N.71, G.97, G.98, S.99, P.100, D.102, K.105, T.138, T.139, T.142, S.144, T.147, Y.149, I.151, Y.176, S.179, M.180, L.184, T.188, D.191, H.195, H.272 Ligands: ZN.5 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.142 Hydrogen bonds: B:K.39, B:S.40, B:S.41, B:S.41, B:S.41, B:N.45, B:E.70, B:G.97, B:G.98, B:S.99, B:S.99, B:S.99, B:D.102, B:T.138, B:T.139, B:T.139, B:T.147 Water bridges: B:G.38, B:S.42, B:E.70, B:E.70, B:T.138, B:T.138, B:T.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins (2005)

Release Date

2003-12-30

Peptides

alcohol dehydrogenase, iron-containing: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

alcohol dehydrogenase, iron-containing