SMTL ID : 1vhw.1

Crystal structure of purine nucleoside phosphorylase with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-hexamer

Ligands

6 x ADN: ADENOSINE(Non-covalent)

ADN.1: 13 residues within 4Å: Chain A: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184, I.209 Chain D: H.7, R.46 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.90, A:R.90, A:M.183, A:E.184, D:R.46 Water bridges: A:G.23, A:S.93, A:S.93, A:C.94 ADN.2: 12 residues within 4Å: Chain B: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184 Chain F: H.7, R.46 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:R.90, B:R.90, B:E.184, F:H.7, F:R.46 Water bridges: B:G.23, B:S.93, B:C.94, B:S.206 ADN.3: 13 residues within 4Å: Chain C: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184, I.209 Chain E: H.7, R.46 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:R.90, C:R.90, C:E.184, E:R.46 Water bridges: C:G.23, C:S.93, C:S.93, C:S.93, C:C.94, E:R.46 pi-Stacking: C:F.162 ADN.4: 13 residues within 4Å: Chain A: H.7, R.46 Chain D: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184, I.209 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:R.90, D:R.90, D:M.183, D:E.184, A:R.46 Water bridges: D:G.23, D:S.93, D:S.93, D:S.93, D:S.93, D:C.94, A:R.46 pi-Stacking: D:F.162 ADN.5: 13 residues within 4Å: Chain C: H.7, R.46 Chain E: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184, I.209 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:R.90, E:R.90, E:M.183, E:E.184, C:R.46 Water bridges: E:G.23, E:S.93, E:S.93, E:C.94 ADN.6: 12 residues within 4Å: Chain B: H.7, R.46 Chain F: M.67, R.90, S.93, C.94, G.95, F.162, V.181, E.182, M.183, E.184 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:R.90, F:R.90, F:E.184, B:H.7, B:R.46 Water bridges: F:G.23, F:S.93, F:C.94, F:D.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins (2005)

Release Date

2003-12-30

Peptides

purine nucleoside phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

purine nucleoside phosphorylase

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