SMTL ID : 1vi2.1

Crystal structure of shikimate-5-dehydrogenase with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.69, M.70, P.71, N.72, K.73, Q.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.69, A:K.73, A:Q.74, A:Q.74 SO4.3: 6 residues within 4Å: Chain B: S.69, M.70, P.71, N.72, K.73, Q.74 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.73, B:Q.74, B:Q.74 Water bridges: B:L.75, B:G.136 Salt bridges: B:K.73

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 22 residues within 4Å: Chain A: D.109, G.133, A.134, G.135, G.136, A.137, N.157, R.158, D.160, F.162, G.205, T.206, K.207, V.208, M.210, L.218, C.234, V.235, Y.236, G.257, M.260, L.261 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.134, A:G.135, A:G.136, A:A.137, A:N.157, A:D.160, A:T.206, A:K.207, A:C.234, A:L.261 Water bridges: A:K.73, A:S.138, A:R.158, A:R.158, A:E.216 Salt bridges: A:K.207, A:K.207 pi-Cation interactions: A:R.158, A:R.158 NAD.4: 22 residues within 4Å: Chain B: D.109, G.133, A.134, G.135, G.136, A.137, N.157, R.158, D.160, F.162, L.186, G.205, T.206, K.207, V.208, M.210, C.234, V.235, Y.236, G.257, M.260, L.261 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.134, B:G.136, B:A.137, B:N.157, B:R.158, B:D.160, B:T.206, B:K.207, B:C.234, B:L.261 Water bridges: B:K.73, B:G.135, B:S.138, B:R.158 Salt bridges: B:K.207 pi-Cation interactions: B:R.158, B:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins (2005)

Release Date

2003-12-30

Peptides

Shikimate 5-dehydrogenase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Shikimate 5-dehydrogenase 2