SMTL ID : 1vki.1

Crystal structure of a putative oligo-nucleotide binding protein (atu3699, agr_l_2275) from agrobacterium tumefaciens str. c58 at 1.60 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: P.115, G.116, S.117, V.118 Chain B: F.44, T.45, V.46 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.116, A:V.118, B:V.46 SO4.3: 7 residues within 4Å: Chain A: F.44, T.45, V.46 Chain B: P.115, G.116, S.117, V.118 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.116, B:V.118, A:V.46 Water bridges: B:N.63, B:V.118

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: T.36, T.37, K.38, L.55, I.56, P.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.37 Water bridges: A:L.55, A:T.157 GOL.4: 9 residues within 4Å: Chain A: K.62, L.64, A.82, V.83, V.84 Chain B: V.46, Q.50, R.53, N.81 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.50, B:R.53, B:N.81, B:N.81, A:V.84 Water bridges: B:R.53, A:K.62, A:K.62 GOL.5: 7 residues within 4Å: Chain A: V.46, Q.50 Chain B: K.62, L.64, A.82, V.83, V.84 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.50, B:K.62, B:V.84, B:V.84 Water bridges: A:R.53, A:R.53, A:N.81 GOL.6: 6 residues within 4Å: Chain B: G.58, G.59, H.60, E.79, E.80, N.81 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.58, B:H.60, B:E.79, B:E.80, B:N.81, B:N.81, B:A.82 Water bridges: B:N.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (ATU3699) from Agrobacterium tumefaciens at 1.60 A resolution. To be published

Release Date

2004-06-08

Peptides

HYPOTHETICAL PROTEIN ATU3699: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HYPOTHETICAL PROTEIN ATU3699