- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
- 6 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)
UNL.4: 13 residues within 4Å:- Chain A: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, K.254, T.257
20 PLIP interactions:17 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:V.109, A:T.126, A:G.128, A:G.130, A:S.140, A:D.142, A:K.159
- Water bridges: A:K.89, A:K.89, A:T.108, A:G.127, A:Q.141, A:Q.141, A:Q.141, A:D.142, A:T.257, C:E.172, C:E.172, C:E.172
- Salt bridges: A:K.89
UNL.8: 13 residues within 4Å:- Chain B: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, T.257
- Ligands: EDO.9
22 PLIP interactions:19 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:V.109, B:T.126, B:G.128, B:G.130, B:S.140, B:D.142, B:K.159
- Water bridges: B:K.89, B:S.110, B:Q.141, B:Q.141, B:Q.141, B:D.142, B:T.257, B:T.257, B:T.257, B:T.257, A:E.172, A:E.172, A:E.172
- Salt bridges: B:K.89, B:K.254
UNL.15: 12 residues within 4Å:- Chain C: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, T.257
18 PLIP interactions:16 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:V.109, C:G.128, C:G.130, C:S.140, C:D.142, C:K.159
- Water bridges: C:K.89, C:K.89, C:S.110, C:G.127, C:Q.141, C:Q.141, C:Q.141, C:Q.141, C:D.142, B:E.172, B:E.172
- Salt bridges: C:K.89
UNL.20: 13 residues within 4Å:- Chain D: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, K.254, T.257
20 PLIP interactions:19 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:V.109, D:G.128, D:G.130, D:S.140, D:D.142, D:K.159
- Water bridges: D:K.89, D:K.89, D:S.110, D:G.128, D:Q.141, D:Q.141, D:Q.141, D:Q.141, D:D.142, D:G.253, D:T.257, D:T.257, E:E.172
- Salt bridges: D:K.89
UNL.26: 12 residues within 4Å:- Chain E: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, T.257
21 PLIP interactions:19 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:V.109, E:G.128, E:G.130, E:S.140, E:D.142, E:K.159
- Water bridges: E:K.89, E:K.89, E:S.110, E:G.127, E:Q.141, E:Q.141, E:Q.141, E:D.142, E:G.253, E:T.257, E:T.257, E:T.257, F:E.172, F:E.172
- Salt bridges: E:K.89
UNL.33: 13 residues within 4Å:- Chain F: E.29, T.31, K.89, T.108, V.109, T.126, G.128, G.130, S.140, D.142, K.159, K.254, T.257
20 PLIP interactions:17 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:V.109, F:T.126, F:G.128, F:G.130, F:S.140, F:D.142, F:K.159
- Water bridges: F:K.89, F:G.127, F:Q.141, F:Q.141, F:Q.141, F:D.142, F:D.142, F:T.257, F:T.257, D:E.172, D:E.172, D:E.172
- Salt bridges: F:K.89
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: H.7, H.8, H.10
- Chain E: H.7, H.8, H.9, H.10
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:H.10, E:H.8, E:H.10
- Water bridges: A:H.9, A:H.9, A:H.10
EDO.9: 10 residues within 4Å:- Chain B: E.29, V.32, T.126, G.127, G.128, K.159, F.189, N.276, L.280
- Ligands: UNL.8
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.127, B:G.128, B:K.159, B:K.159, B:N.276, B:N.276
EDO.10: 6 residues within 4Å:- Chain B: I.176, P.177, L.178, P.199
- Chain C: R.93, I.97
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.176, B:L.178
EDO.11: 8 residues within 4Å:- Chain B: H.7, H.8, H.9, H.10
- Chain F: H.7, H.8, H.9, H.10
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain F- Hydrogen bonds: B:H.10, F:H.8, F:H.9, F:H.10
EDO.16: 8 residues within 4Å:- Chain C: H.7, H.8, H.9, H.10
- Chain D: H.7, H.8, H.9, H.10
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:H.10, C:H.9, C:H.10
- Water bridges: D:H.9
EDO.17: 5 residues within 4Å:- Chain A: H.8
- Chain C: R.150, K.215, E.218
- Chain E: K.5
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain C- Hydrogen bonds: E:K.5, C:R.150, C:R.150
- Water bridges: C:E.218
EDO.21: 6 residues within 4Å:- Chain D: R.93, E.94, I.97
- Chain E: P.177, L.178, P.199
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:R.93, E:L.178
EDO.22: 6 residues within 4Å:- Chain D: D.88, V.90, E.94, I.97, V.98
- Chain E: R.197
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:D.88, E:R.197
EDO.27: 4 residues within 4Å:- Chain E: T.144, S.147, L.174
- Chain F: L.174
No protein-ligand interaction detected (PLIP)EDO.28: 5 residues within 4Å:- Chain D: R.136, V.139, M.170
- Chain E: M.170, T.173
No protein-ligand interaction detected (PLIP)EDO.29: 4 residues within 4Å:- Chain E: L.162, D.163, V.164, E.165
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:V.164, E:E.165
- Water bridges: E:L.162, E:L.162, E:D.163, E:E.165, E:E.165, E:E.165, E:E.241
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Levin, I. et al., Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold. Proteins (2005)
- Release Date
- 2004-06-29
- Peptides
- conserved hypothetical protein TM1464: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
- 6 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Levin, I. et al., Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold. Proteins (2005)
- Release Date
- 2004-06-29
- Peptides
- conserved hypothetical protein TM1464: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F