SMTL ID : 1vl0.1

CRYSTAL STRUCTURE OF A DTDP-4-DEHYDRORHAMNOSE REDUCTASE, RFBD ORTHOLOG (CA_C2315) FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824 AT 2.05 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

3 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 24 residues within 4Å: Chain A: G.19, G.22, Q.23, L.24, D.43, V.44, L.47, D.48, I.49, T.50, C.70, A.71, A.72, T.74, I.89, I.111, S.112, T.113, Y.137, K.141, T.160, A.161, W.162, L.163 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.163 Hydrogen bonds: A:G.19, A:G.19, A:Q.23, A:Q.23, A:L.24, A:D.48, A:I.49, A:C.70, A:A.72, A:Y.137, A:K.141, A:W.162, A:L.163 Water bridges: A:G.22, A:G.25 NAI.3: 24 residues within 4Å: Chain B: G.19, G.22, Q.23, L.24, D.43, V.44, L.47, D.48, I.49, T.50, C.70, A.71, A.72, T.74, I.89, I.111, S.112, T.113, Y.137, K.141, T.160, A.161, W.162, L.163 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.19, B:Q.23, B:Q.23, B:L.24, B:D.48, B:I.49, B:C.70, B:A.72, B:T.74, B:K.141, B:W.162, B:L.163 Water bridges: B:G.22, B:G.25, B:D.43 NAI.4: 23 residues within 4Å: Chain C: G.19, G.22, Q.23, L.24, D.43, V.44, L.47, D.48, I.49, T.50, C.70, A.71, A.72, T.74, I.89, I.111, S.112, T.113, Y.137, K.141, T.160, W.162, L.163 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.19, C:G.19, C:Q.23, C:Q.23, C:L.24, C:D.48, C:I.49, C:A.72, C:Y.137, C:K.141, C:L.163, C:L.163 Water bridges: C:G.25

1 x UNL: UNKNOWN LIGAND

UNL.2: 9 residues within 4Å: Chain A: P.124, T.193, T.219, C.220, G.222, I.223, L.263, R.264, N.265 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.219, A:G.222, A:G.222, A:L.263, A:N.265 Water bridges: A:L.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution. To be published

Release Date

2004-08-17

Peptides

DTDP-4-dehydrorhamnose reductase, rfbD ortholog: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DTDP-4-dehydrorhamnose reductase, rfbD ortholog