SMTL ID : 1vl8.1 (1 other biounit)

Crystal structure of Gluconate 5-dehydrogenase (TM0441) from Thermotoga maritima at 2.07 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.124, E.128, F.132 Chain B: R.124, E.128, F.132 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.128, A:E.128, A:E.128, B:E.128 Water bridges: B:R.124

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 29 residues within 4Å: Chain A: G.28, S.30, R.31, G.32, L.33, S.52, R.53, N.54, C.78, D.79, V.80, A.106, A.107, G.108, I.109, V.129, I.156, G.157, S.158, Y.172, K.176, P.202, G.203, W.204, Y.205, T.207, K.208, M.209, T.210 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.33, A:P.202, A:P.202 Hydrogen bonds: A:G.28, A:S.30, A:S.30, A:R.31, A:L.33, A:R.53, A:R.53, A:N.54, A:D.79, A:V.80, A:A.106, A:G.108, A:K.176, A:Y.205, A:Y.205, A:K.208, A:M.209 Water bridges: A:R.31, A:G.34, A:N.54 Salt bridges: A:R.31, A:R.31, A:R.53 NAP.4: 30 residues within 4Å: Chain B: G.28, S.30, R.31, G.32, L.33, S.52, R.53, N.54, E.57, C.78, D.79, V.80, A.106, A.107, G.108, I.109, V.129, I.156, G.157, S.158, Y.172, K.176, P.202, G.203, W.204, Y.205, T.207, K.208, M.209, T.210 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:L.33, B:P.202 Hydrogen bonds: B:G.28, B:S.30, B:S.30, B:R.31, B:L.33, B:R.53, B:R.53, B:N.54, B:D.79, B:V.80, B:A.106, B:G.108, B:K.176, B:Y.205, B:Y.205, B:T.207, B:M.209 Water bridges: B:R.31, B:R.31, B:R.31, B:G.34, B:S.52, B:S.52, B:K.208 Salt bridges: B:R.31, B:R.31, B:R.53

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain B: E.163 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.163, H2O.8, H2O.8, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Gluconate 5-dehydrogenase (TM0441) from Thermotoga maritima at 2.07 A resolution. To be published

Release Date

2004-08-17

Peptides

Gluconate 5-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gluconate 5-dehydrogenase

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