SMTL ID : 1vlj.1

Crystal structure of NADH-dependent butanol dehydrogenase A (TM0820) from Thermotoga maritima at 1.78 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: D.207, H.211, H.280, H.294 Ligands: NAP.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.207, A:D.207, A:H.211, A:H.280, A:H.294 FE.3: 5 residues within 4Å: Chain B: D.207, H.211, H.280, H.294 Ligands: NAP.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.207, B:D.207, B:H.211, B:H.280, B:H.294

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 32 residues within 4Å: Chain A: G.51, G.52, G.53, S.54, N.58, P.83, N.84, P.85, G.110, G.111, S.112, D.115, T.151, I.152, A.154, T.155, T.157, N.160, N.162, A.163, V.164, K.173, V.192, Q.193, T.195, L.196, Q.200, D.207, H.211, L.264, H.294 Ligands: FE.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.52, A:S.54, A:S.54, A:N.58, A:P.83, A:G.111, A:S.112, A:S.112, A:D.115, A:T.151, A:T.157, A:N.160, A:N.162, A:K.173, A:K.173, A:V.192, A:T.195 Water bridges: A:G.51, A:I.55, A:I.55 NAP.4: 31 residues within 4Å: Chain B: G.51, G.52, G.53, S.54, P.83, N.84, P.85, G.110, G.111, S.112, D.115, T.151, I.152, A.154, T.155, T.157, N.160, N.162, A.163, V.164, K.173, V.192, Q.193, T.195, L.196, Q.200, D.207, H.211, L.264, H.294 Ligands: FE.3 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.52, B:S.54, B:S.54, B:N.58, B:P.83, B:G.111, B:S.112, B:S.112, B:D.115, B:T.151, B:T.157, B:N.160, B:N.162, B:K.173, B:K.173, B:V.192, B:T.195 Water bridges: B:G.51, B:G.51, B:I.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of NADH-dependent butanol dehydrogenase A (TM0820) from Thermotoga maritima at 1.78 A resolution. To be published

Release Date

2004-08-17

Peptides

NADH-dependent butanol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NADH-dependent butanol dehydrogenase