SMTL ID : 1vlr.1

Crystal structure of mRNA decapping enzyme (DcpS) from Mus musculus at 1.83 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: F.202, E.258, E.261, A.262, K.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.265 EDO.2: 2 residues within 4Å: Chain A: E.81, G.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.81, A:G.88 EDO.3: 7 residues within 4Å: Chain A: Q.311 Chain B: N.315, H.322, Y.323, R.326, T.327, L.328 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.323, B:T.327 Water bridges: B:N.315, B:R.326, B:T.327, A:Q.311, A:Q.311 EDO.4: 8 residues within 4Å: Chain A: N.315, H.322, Y.323, R.326, T.327, L.328 Chain B: Q.311, N.315 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.323, A:Y.323, A:R.326 Water bridges: A:H.307, A:T.327, B:Q.311, B:Q.311, B:Q.311 EDO.5: 1 residues within 4Å: Chain B: E.247 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: P.131 Chain B: P.131, P.132, R.133, S.136 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:R.133, A:S.136, A:S.136 Hydrogen bonds: B:P.131, B:S.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, G.W. et al., Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 A resolution. Proteins (2005)

Release Date

2004-08-24

Peptides

mRNA decapping enzyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA decapping enzyme