SMTL ID : 1vly.1

Crystal structure of a putative aminomethyltransferase (ygfz) from escherichia coli at 1.30 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: W.39, R.86, I.97, F.166, L.174, W.201, N.205 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.97, A:L.174 Hydrogen bonds: A:W.201, A:N.205 Water bridges: A:R.86, A:R.172 Salt bridges: A:R.86

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: E.298 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.298, H2O.4, H2O.6, H2O.10, H2O.15

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Q.220, F.221, I.222, A.225, R.258 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: F.15, T.35, L.36, D.37, V.128, L.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.129 Water bridges: A:D.37 EDO.5: 5 residues within 4Å: Chain A: K.111, A.114, V.119, T.120, I.121 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.111, A:I.121, A:I.121 Water bridges: A:K.111, A:K.111, A:K.111 EDO.6: 1 residues within 4Å: Chain A: E.272 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Unknown protein from 2D-page (Spot PR51) (b2898) from Escherichia coli k12 at 1.30 A resolution. To be published

Release Date

2004-08-31

Peptides

Unknown protein from 2D-page: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unknown protein from 2D-page