- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.27 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 25 residues within 4Å:- Chain A: G.19, Y.20, S.21, G.22, R.23, M.24, D.44, V.45, F.60, S.61, S.62, E.64, A.65, G.83, T.84, T.85, A.107, Y.108, N.109, F.110, K.143, D.145, F.199
- Ligands: ACT.1, ACT.2
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:G.19, A:S.21, A:G.22, A:R.23, A:M.24, A:D.44, A:V.45, A:S.61, A:S.62, A:G.83, A:T.85, A:F.110, A:K.143, A:D.145
- Water bridges: A:R.23, A:R.23, A:R.23, A:G.25, A:T.85
- Salt bridges: A:R.23, A:R.23, A:K.144
- pi-Stacking: A:F.60, A:F.199
NAD.10: 25 residues within 4Å:- Chain B: G.19, Y.20, S.21, G.22, R.23, M.24, D.44, V.45, F.60, S.61, S.62, E.64, A.65, G.83, T.84, T.85, A.107, Y.108, N.109, F.110, K.143, D.145, F.199
- Ligands: ACT.5, ACT.9
24 PLIP interactions:24 interactions with chain B- Hydrogen bonds: B:G.19, B:S.21, B:G.22, B:R.23, B:M.24, B:V.45, B:S.61, B:S.62, B:E.64, B:G.83, B:T.85, B:F.110, B:D.145
- Water bridges: B:S.21, B:S.21, B:R.23, B:R.23, B:G.25, B:K.144, B:D.145
- Salt bridges: B:R.23, B:R.23
- pi-Stacking: B:F.60, B:F.199
NAD.16: 21 residues within 4Å:- Chain C: G.19, S.21, G.22, R.23, M.24, D.44, V.45, F.60, S.61, S.62, E.64, A.65, G.83, T.84, T.85, A.107, Y.108, N.109, F.110, F.199
- Ligands: PG4.18
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:F.60
- Hydrogen bonds: C:G.19, C:S.21, C:S.21, C:G.22, C:R.23, C:M.24, C:V.45, C:S.61, C:S.62, C:E.64, C:G.83, C:T.85, C:F.110
- Salt bridges: C:R.23, C:R.23
- pi-Stacking: C:F.199
NAD.21: 25 residues within 4Å:- Chain D: G.19, Y.20, S.21, G.22, R.23, M.24, D.44, V.45, F.60, S.61, S.62, A.65, G.83, T.84, T.85, A.107, Y.108, N.109, F.110, K.143, K.144, D.145, F.199
- Ligands: ACT.19, ACT.20
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:F.60, D:F.199
- Hydrogen bonds: D:G.19, D:S.21, D:S.21, D:G.22, D:R.23, D:M.24, D:V.45, D:S.61, D:S.62, D:G.83, D:T.85, D:F.110, D:D.145
- Water bridges: D:G.25, D:S.62, D:K.143, D:K.144, D:K.144, D:K.144
- Salt bridges: D:R.23, D:R.23, D:K.144
- pi-Stacking: D:F.199
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.11: 6 residues within 4Å:- Chain B: Y.20, Q.29, L.39, K.42, E.49, L.51
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.42, B:E.49
PG4.12: 7 residues within 4Å:- Chain B: L.87, K.88, L.92, Q.106, Y.108, L.153, S.156
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.106
PG4.13: 3 residues within 4Å:- Chain B: R.119, F.120, F.225
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.119
PG4.18: 7 residues within 4Å:- Chain C: Y.108, N.109, P.173, S.195, R.196, F.199
- Ligands: NAD.16
2 PLIP interactions:2 interactions with chain C- Water bridges: C:N.109, C:R.196
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of Dihydrodipicolinate reductase (TM1520) from Thermotoga maritima at 2.27 A resolution. To be published
- Release Date
- 2004-09-21
- Peptides
- Dihydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.27 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of Dihydrodipicolinate reductase (TM1520) from Thermotoga maritima at 2.27 A resolution. To be published
- Release Date
- 2004-09-21
- Peptides
- Dihydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D