SMTL ID : 1vmd.1

Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 Chain F: I.167 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.61, A:T.63, A:T.64, A:T.64, A:S.81, A:G.82 Water bridges: A:K.39, A:K.39, A:K.39, A:K.39, A:K.39, A:K.39 Salt bridges: A:K.39 SO4.3: 9 residues within 4Å: Chain B: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 Chain C: I.167 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.36, B:T.61, B:T.61, B:T.63, B:T.63, B:T.64, B:G.82 Water bridges: B:K.39, B:K.39, B:K.39, B:K.39 Salt bridges: B:K.39 SO4.5: 9 residues within 4Å: Chain B: I.167 Chain C: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.61, C:T.63, C:T.64, C:T.64, C:T.64, C:S.81, C:G.82 Water bridges: C:K.39, C:K.39, C:K.39, C:K.39, C:K.39, C:K.39 Salt bridges: C:K.39 SO4.7: 9 residues within 4Å: Chain D: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 Chain E: I.167 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:D.36, D:T.61, D:T.61, D:T.63, D:T.64, D:G.82 Water bridges: D:K.39, D:K.39, D:K.39, D:K.39 Salt bridges: D:K.39 SO4.9: 9 residues within 4Å: Chain D: I.167 Chain E: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:T.61, E:T.63, E:T.64, E:T.64, E:T.64, E:S.81, E:G.82 Water bridges: E:K.39, E:K.39, E:K.39, E:K.39, E:K.39, E:K.39 Salt bridges: E:K.39 SO4.11: 9 residues within 4Å: Chain A: I.167 Chain F: K.39, T.61, G.62, T.63, T.64, S.81, G.82, P.83 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:D.36, F:T.61, F:T.61, F:T.63, F:T.63, F:T.64, F:T.64, F:G.82 Water bridges: F:K.39, F:K.39, F:K.39, F:K.39 Salt bridges: F:K.39

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.38, T.135, R.136 Chain B: N.129 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: N.129 Chain B: R.38, T.135, R.136 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: R.38, T.135, R.136 Chain D: N.129 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: N.129 Chain D: R.38, T.135, R.136 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain E: R.38, T.135, R.136 Chain F: N.129 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain E: N.129 Chain F: R.38, T.135, R.136 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution. To be published

Release Date

2004-09-28

Peptides

Methylglyoxal synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Methylglyoxal synthase