SMTL ID : 1vph.1 (1 other biounit)

CRYSTAL STRUCTURE OF a YbjQ-like protein of unknown function (SSO2532) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.76 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-trimer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: H.91, D.95, N.97, H.101 Chain B: E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.91, A:D.95, A:D.95, A:H.101, H2O.2 K.5: 4 residues within 4Å: Chain C: H.91, D.95, N.97, H.101 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.91, C:D.95, C:H.101, H2O.2

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: H.57, S.58, T.59, R.137, R.140 Chain B: W.125 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.58, A:S.58, A:T.59 Water bridges: A:N.97 Salt bridges: A:H.57, A:R.137, A:R.140 PO4.3: 3 residues within 4Å: Chain A: R.137, S.138, E.139 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.138, A:S.138, A:S.138, A:E.139 Water bridges: A:R.137, A:R.137 Salt bridges: A:R.137 PO4.4: 6 residues within 4Å: Chain B: H.57, S.58, T.59, R.137, R.140 Chain C: W.125 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.58, B:T.59 Water bridges: B:R.137, B:R.137 Salt bridges: B:H.57, B:R.137, B:R.140 PO4.6: 6 residues within 4Å: Chain A: W.125 Chain C: H.57, S.58, T.59, R.137, R.140 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.58, C:T.59, C:T.59 Salt bridges: C:H.57, C:R.137, C:R.140 PO4.7: 3 residues within 4Å: Chain C: H.8, H.9, H.10 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.9, C:H.10 Water bridges: C:H.11 Salt bridges: C:H.8, C:H.10

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain C: H.10, H.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (13815834) from Sulfolobus solfataricus at 1.76 A resolution. To be published

Release Date

2004-11-16

Peptides

hypothetical protein SSO2532: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

hypothetical protein SSO2532

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