SMTL ID : 1vpt.1

AS11 VARIANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: Q.54, L.57, Y.81, I.82, G.83, S.84, A.85, P.86, G.87, H.89, I.109, D.110, R.112, R.129, F.130, V.131, D.153, V.154, A.155, L.174 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.54, A:Y.81, A:G.83, A:G.83, A:A.85, A:A.85, A:G.87, A:R.112, A:R.112, A:V.131, A:V.131, A:D.153, A:A.155 Salt bridges: A:H.89, A:D.153 pi-Stacking: A:F.130, A:F.130 SAM.2: 20 residues within 4Å: Chain B: Q.54, L.57, Y.81, I.82, G.83, S.84, A.85, P.86, G.87, H.89, I.109, D.110, R.112, R.129, F.130, V.131, D.153, V.154, A.155, L.174 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:Q.54, B:G.83, B:G.83, B:A.85, B:A.85, B:G.87, B:R.112, B:R.112, B:V.131, B:V.131, B:A.155 Salt bridges: B:H.89, B:D.153 pi-Stacking: B:F.130, B:F.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodel, A.E. et al., The 1.85 A structure of vaccinia protein VP39: a bifunctional enzyme that participates in the modification of both mRNA ends. Cell(Cambridge,Mass.) (1996)

Release Date

1996-08-17

Peptides

VP39: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

VP39