SMTL ID : 1vra.2 (1 other biounit)

Crystal structure of Arginine biosynthesis bifunctional protein argJ (10175521) from Bacillus halodurans at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: T.135, G.136, T.172, K.198, G.201 Chain B: T.1 Ligands: EDO.7, EDO.16 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.136, A:T.172, A:G.201, B:T.1, B:T.1 Water bridges: A:T.135, A:G.136, A:K.198, A:K.198 Salt bridges: A:K.198 SO4.2: 4 residues within 4Å: Chain A: P.126, E.127, H.128 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.127, A:H.128 Salt bridges: A:H.128 SO4.20: 8 residues within 4Å: Chain C: T.135, G.136, T.172, K.198, G.201 Chain D: T.1 Ligands: EDO.26, EDO.35 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.136, C:G.201, D:T.1 Water bridges: C:G.136, C:T.172, C:K.198, D:T.1 Salt bridges: C:K.198 SO4.21: 4 residues within 4Å: Chain C: P.126, E.127, H.128 Ligands: EDO.25 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.127, C:H.128 Salt bridges: C:H.128

2 x UNL: UNKNOWN LIGAND

UNL.3: 6 residues within 4Å: Chain A: K.46, R.47, K.48, R.49, T.172 Ligands: EDO.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.47, A:K.48, A:R.49, A:T.172 Water bridges: A:R.49 UNL.22: 6 residues within 4Å: Chain C: K.46, R.47, K.48, R.49, T.172 Ligands: EDO.32 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.47, C:K.48, C:R.49, C:T.172 Water bridges: C:R.49

32 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: H.42, K.48, K.50, E.168 Ligands: EDO.5, EDO.14 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: E.168 Ligands: EDO.4 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: A.120, E.121, I.125, P.126 Ligands: SO4.2 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: G.136, V.137, T.172, T.173 Ligands: SO4.1, EDO.13 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: V.39, G.40, E.157, G.162, A.165 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: C.57, E.58, F.123, I.125 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: A.65, Y.67, I.84 Chain B: Q.18 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: I.138 Chain D: N.129, W.130, G.131 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: T.19, A.20, I.185, N.187, G.188 Chain B: D.63 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: G.98, G.136, T.172, T.173 Ligands: UNL.3, EDO.7 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: G.40, I.41, H.42, K.50 Ligands: EDO.4 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain B: G.88, Y.124, T.203, Y.204, D.205 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain A: T.173, G.201 Chain B: E.87, N.210 Chain D: L.118 Ligands: SO4.1 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: D.150, I.151, A.152, S.185, V.186, N.187 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: Y.182 Chain B: L.73, E.76, D.77, K.80 Ligand excluded by PLIP EDO.19: 10 residues within 4Å: Chain A: P.60, A.61, S.62, K.89 Chain B: A.10, N.11, I.12, A.48, S.49, G.50 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain C: H.42, K.48, K.50, E.168 Ligands: EDO.24, EDO.33 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain C: E.168 Ligands: EDO.23 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain C: A.120, E.121, I.125, P.126 Ligands: SO4.21 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain C: G.136, V.137, T.172, T.173 Ligands: SO4.20, EDO.32 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain C: V.39, G.40, E.157, G.162, A.165 Ligand excluded by PLIP EDO.28: 4 residues within 4Å: Chain C: C.57, E.58, F.123, I.125 Ligand excluded by PLIP EDO.29: 4 residues within 4Å: Chain C: A.65, Y.67, I.84 Chain D: Q.18 Ligand excluded by PLIP EDO.30: 4 residues within 4Å: Chain B: N.129, W.130, G.131 Chain C: I.138 Ligand excluded by PLIP EDO.31: 6 residues within 4Å: Chain C: T.19, A.20, I.185, N.187, G.188 Chain D: D.63 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain C: G.98, G.136, T.172, T.173 Ligands: UNL.22, EDO.26 Ligand excluded by PLIP EDO.33: 5 residues within 4Å: Chain C: G.40, I.41, H.42, K.50 Ligands: EDO.23 Ligand excluded by PLIP EDO.34: 5 residues within 4Å: Chain D: G.88, Y.124, T.203, Y.204, D.205 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain B: L.118 Chain C: T.173, G.201 Chain D: E.87, N.210 Ligands: SO4.20 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain D: D.150, I.151, A.152, S.185, V.186, N.187 Ligand excluded by PLIP EDO.37: 5 residues within 4Å: Chain C: Y.182 Chain D: L.73, E.76, D.77, K.80 Ligand excluded by PLIP EDO.38: 10 residues within 4Å: Chain C: P.60, A.61, S.62, K.89 Chain D: A.10, N.11, I.12, A.48, S.49, G.50 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Arginine biosynthesis bifunctional protein argJ (10175521) from Bacillus halodurans at 2.00 A resolution. To be published

Release Date

2005-04-12

Peptides

Arginine biosynthesis bifunctional protein argJ: AC
Arginine biosynthesis bifunctional protein argJ: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Arginine biosynthesis bifunctional protein argJ

Arginine biosynthesis bifunctional protein argJ

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