SMTL ID : 1vrp.1

The 2.1 Structure of T. californica Creatine Kinase Complexed with the Transition-State Analogue Complex, ADP-Mg 2+ /NO3-/Creatine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: W.228, E.232 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Ligands: NO3.4, ADP.5 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: S.128, R.130, R.132, H.191, W.228, R.292, G.294, V.295, H.296, R.320, T.322, D.335 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.128, A:R.130, A:I.188, A:R.292, A:G.294, A:T.322, A:T.322 Water bridges: A:R.130, A:R.236, A:R.236, A:R.292, A:G.294 Salt bridges: A:R.130, A:R.132, A:R.292, A:R.292, A:R.320 pi-Stacking: A:H.296 pi-Cation interactions: A:R.130 ADP.5: 18 residues within 4Å: Chain B: S.128, R.130, R.132, H.191, W.228, R.236, R.292, G.294, V.295, H.296, R.320, T.322, G.323, G.324, V.325, D.335 Ligands: MG.3, NO3.4 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:S.128, B:S.128, B:R.292, B:G.323, B:V.325 Water bridges: B:R.130, B:R.130, B:L.193, B:R.236, B:R.292, B:G.294 Salt bridges: B:R.130, B:R.132, B:R.236, B:R.292, B:R.292, B:R.320, B:R.320 pi-Stacking: B:H.296

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 9 residues within 4Å: Chain B: R.132, E.232, R.236, N.286, R.320, V.325 Ligands: MG.3, ADP.5, IOM.6 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.132, B:R.236, B:R.236, B:N.286, B:R.320, B:R.320 Water bridges: B:E.232, B:E.232, B:S.285, B:R.341

1 x IOM: (DIAMINOMETHYL-METHYL-AMINO)-ACETIC ACID(Non-covalent)

IOM.6: 10 residues within 4Å: Chain B: I.69, T.71, V.72, L.201, E.232, C.283, S.285, N.286, V.325 Ligands: NO3.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.72, B:S.285, B:S.285, B:N.286 Water bridges: B:G.73 Salt bridges: B:E.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lahiri, S.D. et al., The 2.1 A Structure of Torpedo californica Creatine Kinase Complexed with the ADP-Mg(2+)-NO3(-)-Creatine Transition-State Analogue Complex. Biochemistry (2002)

Release Date

2005-05-03

Peptides

Creatine Kinase, M chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Creatine Kinase, M chain