SMTL ID : 1vs0.1 (1 other biounit)

Crystal Structure of the Ligase Domain from M. tuberculosis LigD at 2.4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: K.32, D.34, E.164 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.32, A:D.34, A:D.34, A:E.164, A:E.164 ZN.2: 3 residues within 4Å: Chain A: E.278, R.299 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.278, A:E.278

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: L.13, A.14, K.32, R.180, K.186 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: E.278, R.296, R.299 Ligands: ZN.2 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: E.5, D.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.5, A:E.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akey, D. et al., Crystal Structure and Nonhomologous End-joining Function of the Ligase Component of Mycobacterium DNA Ligase D. J.Biol.Chem. (2006)

Release Date

2006-02-28

Peptides

Putative DNA ligase-like protein Rv0938/MT0965: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative DNA ligase-like protein Rv0938/MT0965

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