SMTL ID : 1vsg.1

2.9 ANGSTROMS RESOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF A VARIANT SURFACE GLYCOPROTEIN FROM TRYPANOSOMA BRUCEI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: K.38, K.41, M.42, A.45, R.48, Y.72, N.263, E.313, S.317, G.335 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.313 Hydrogen bonds: A:R.48, A:S.317, A:S.317

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 11 residues within 4Å: Chain B: K.38, K.41, M.42, A.45, R.48, Y.72, N.263, E.313, S.317, G.335, E.336 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.48, B:S.317, B:S.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freymann, D. et al., 2.9 A resolution structure of the N-terminal domain of a variant surface glycoprotein from Trypanosoma brucei. J.Mol.Biol. (1990)

Release Date

1992-01-15

Peptides

VARIANT SURFACE GLYCOPROTEIN MITAT 1.2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VARIANT SURFACE GLYCOPROTEIN MITAT 1.2

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