SMTL ID : 1vtm.1 (2 other biounits)

STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION

Coordinates

PDB Format Compare

Method

FIBER DIFFRACTION 3.50 Å

Oligo State

homo-49-mer

Ligands

49 x G- A- A: RNA (5'-R(P*GP*AP*A)-3')(Non-covalent)

G-A-A.1: 8 residues within 4Å: Chain A: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.2 Protein-ligand interaction information (PLIP) not available G-A-A.2: 13 residues within 4Å: Chain A: S.86, T.89, R.90, R.113 Chain B: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.1, G-A-A.3 Protein-ligand interaction information (PLIP) not available G-A-A.3: 13 residues within 4Å: Chain B: S.86, T.89, R.90, R.113 Chain C: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.2, G-A-A.4 Protein-ligand interaction information (PLIP) not available G-A-A.4: 13 residues within 4Å: Chain C: S.86, T.89, R.90, R.113 Chain D: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.3, G-A-A.5 Protein-ligand interaction information (PLIP) not available G-A-A.5: 13 residues within 4Å: Chain D: S.86, T.89, R.90, R.113 Chain E: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.4, G-A-A.6 Protein-ligand interaction information (PLIP) not available G-A-A.6: 13 residues within 4Å: Chain E: S.86, T.89, R.90, R.113 Chain F: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.5, G-A-A.7 Protein-ligand interaction information (PLIP) not available G-A-A.7: 13 residues within 4Å: Chain F: S.86, T.89, R.90, R.113 Chain G: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.6, G-A-A.8 Protein-ligand interaction information (PLIP) not available G-A-A.8: 13 residues within 4Å: Chain G: S.86, T.89, R.90, R.113 Chain H: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.7, G-A-A.9 Protein-ligand interaction information (PLIP) not available G-A-A.9: 13 residues within 4Å: Chain H: S.86, T.89, R.90, R.113 Chain I: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.8, G-A-A.10 Protein-ligand interaction information (PLIP) not available G-A-A.10: 13 residues within 4Å: Chain I: S.86, T.89, R.90, R.113 Chain J: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.9, G-A-A.11 Protein-ligand interaction information (PLIP) not available G-A-A.11: 13 residues within 4Å: Chain J: S.86, T.89, R.90, R.113 Chain K: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.10, G-A-A.12 Protein-ligand interaction information (PLIP) not available G-A-A.12: 13 residues within 4Å: Chain K: S.86, T.89, R.90, R.113 Chain L: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.11, G-A-A.13 Protein-ligand interaction information (PLIP) not available G-A-A.13: 13 residues within 4Å: Chain L: S.86, T.89, R.90, R.113 Chain M: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.12, G-A-A.14 Protein-ligand interaction information (PLIP) not available G-A-A.14: 13 residues within 4Å: Chain M: S.86, T.89, R.90, R.113 Chain N: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.13, G-A-A.15 Protein-ligand interaction information (PLIP) not available G-A-A.15: 13 residues within 4Å: Chain N: S.86, T.89, R.90, R.113 Chain O: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.14, G-A-A.16 Protein-ligand interaction information (PLIP) not available G-A-A.16: 13 residues within 4Å: Chain O: S.86, T.89, R.90, R.113 Chain P: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.15, G-A-A.17 Protein-ligand interaction information (PLIP) not available G-A-A.17: 19 residues within 4Å: Chain A: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain P: S.86, T.89, R.90, R.113 Chain Q: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.16, G-A-A.18 Protein-ligand interaction information (PLIP) not available G-A-A.18: 22 residues within 4Å: Chain A: Q.38, T.42, R.92 Chain B: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain Q: S.86, T.89, R.90, R.113 Chain R: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.17, G-A-A.19 Protein-ligand interaction information (PLIP) not available G-A-A.19: 22 residues within 4Å: Chain B: Q.38, T.42, R.92 Chain C: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain R: S.86, T.89, R.90, R.113 Chain S: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.18, G-A-A.20 Protein-ligand interaction information (PLIP) not available G-A-A.20: 22 residues within 4Å: Chain C: Q.38, T.42, R.92 Chain D: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain S: S.86, T.89, R.90, R.113 Chain T: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.19, G-A-A.21 Protein-ligand interaction information (PLIP) not available G-A-A.21: 22 residues within 4Å: Chain D: Q.38, T.42, R.92 Chain E: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain T: S.86, T.89, R.90, R.113 Chain U: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.20, G-A-A.22 Protein-ligand interaction information (PLIP) not available G-A-A.22: 22 residues within 4Å: Chain E: Q.38, T.42, R.92 Chain F: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain U: S.86, T.89, R.90, R.113 Chain V: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.21, G-A-A.23 Protein-ligand interaction information (PLIP) not available G-A-A.23: 22 residues within 4Å: Chain F: Q.38, T.42, R.92 Chain G: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain V: S.86, T.89, R.90, R.113 Chain W: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.22, G-A-A.24 Protein-ligand interaction information (PLIP) not available G-A-A.24: 22 residues within 4Å: Chain G: Q.38, T.42, R.92 Chain H: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain W: S.86, T.89, R.90, R.113 Chain X: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.23, G-A-A.25 Protein-ligand interaction information (PLIP) not available G-A-A.25: 22 residues within 4Å: Chain H: Q.38, T.42, R.92 Chain I: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain X: S.86, T.89, R.90, R.113 Chain Y: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.24, G-A-A.26 Protein-ligand interaction information (PLIP) not available G-A-A.26: 22 residues within 4Å: Chain I: Q.38, T.42, R.92 Chain J: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain Y: S.86, T.89, R.90, R.113 Chain Z: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Ligands: G-A-A.25, G-A-A.27 Protein-ligand interaction information (PLIP) not available G-A-A.27: 22 residues within 4Å: Chain 0: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain J: Q.38, T.42, R.92 Chain K: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain Z: S.86, T.89, R.90, R.113 Ligands: G-A-A.26, G-A-A.28 Protein-ligand interaction information (PLIP) not available G-A-A.28: 22 residues within 4Å: Chain 0: S.86, T.89, R.90, R.113 Chain 1: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain K: Q.38, T.42, R.92 Chain L: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.27, G-A-A.29 Protein-ligand interaction information (PLIP) not available G-A-A.29: 22 residues within 4Å: Chain 1: S.86, T.89, R.90, R.113 Chain 2: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain L: Q.38, T.42, R.92 Chain M: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.28, G-A-A.30 Protein-ligand interaction information (PLIP) not available G-A-A.30: 22 residues within 4Å: Chain 2: S.86, T.89, R.90, R.113 Chain 3: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain M: Q.38, T.42, R.92 Chain N: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.29, G-A-A.31 Protein-ligand interaction information (PLIP) not available G-A-A.31: 22 residues within 4Å: Chain 3: S.86, T.89, R.90, R.113 Chain 4: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain N: Q.38, T.42, R.92 Chain O: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.30, G-A-A.32 Protein-ligand interaction information (PLIP) not available G-A-A.32: 22 residues within 4Å: Chain 4: S.86, T.89, R.90, R.113 Chain 5: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain O: Q.38, T.42, R.92 Chain P: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.31, G-A-A.33 Protein-ligand interaction information (PLIP) not available G-A-A.33: 22 residues within 4Å: Chain 5: S.86, T.89, R.90, R.113 Chain 6: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain P: Q.38, T.42, R.92 Chain Q: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.32, G-A-A.34 Protein-ligand interaction information (PLIP) not available G-A-A.34: 22 residues within 4Å: Chain 6: S.86, T.89, R.90, R.113 Chain 7: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain Q: Q.38, T.42, R.92 Chain R: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.33, G-A-A.35 Protein-ligand interaction information (PLIP) not available G-A-A.35: 22 residues within 4Å: Chain 7: S.86, T.89, R.90, R.113 Chain 8: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain R: Q.38, T.42, R.92 Chain S: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.34, G-A-A.36 Protein-ligand interaction information (PLIP) not available G-A-A.36: 22 residues within 4Å: Chain 8: S.86, T.89, R.90, R.113 Chain 9: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Chain S: Q.38, T.42, R.92 Chain T: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.35, G-A-A.37 Protein-ligand interaction information (PLIP) not available G-A-A.37: 22 residues within 4Å: Chain 9: S.86, T.89, R.90, R.113 Chain T: Q.38, T.42, R.92 Chain U: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.36, G-A-A.38 Chain a: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.38: 22 residues within 4Å: Chain U: Q.38, T.42, R.92 Chain V: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.37, G-A-A.39 Chain a: S.86, T.89, R.90, R.113 Chain b: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.39: 22 residues within 4Å: Chain V: Q.38, T.42, R.92 Chain W: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.38, G-A-A.40 Chain b: S.86, T.89, R.90, R.113 Chain c: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.40: 22 residues within 4Å: Chain W: Q.38, T.42, R.92 Chain X: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.39, G-A-A.41 Chain c: S.86, T.89, R.90, R.113 Chain d: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.41: 22 residues within 4Å: Chain X: Q.38, T.42, R.92 Chain Y: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.40, G-A-A.42 Chain d: S.86, T.89, R.90, R.113 Chain e: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.42: 22 residues within 4Å: Chain Y: Q.38, T.42, R.92 Chain Z: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.41, G-A-A.43 Chain e: S.86, T.89, R.90, R.113 Chain f: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.43: 22 residues within 4Å: Chain 0: N.33, Q.34, T.37, Q.38, Q.39, I.94 Chain Z: Q.38, T.42, R.92 Ligands: G-A-A.42, G-A-A.44 Chain f: S.86, T.89, R.90, R.113 Chain g: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.44: 22 residues within 4Å: Chain 0: Q.38, T.42, R.92 Chain 1: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.43, G-A-A.45 Chain g: S.86, T.89, R.90, R.113 Chain h: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.45: 22 residues within 4Å: Chain 1: Q.38, T.42, R.92 Chain 2: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.44, G-A-A.46 Chain h: S.86, T.89, R.90, R.113 Chain i: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.46: 22 residues within 4Å: Chain 2: Q.38, T.42, R.92 Chain 3: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.45, G-A-A.47 Chain i: S.86, T.89, R.90, R.113 Chain j: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.47: 22 residues within 4Å: Chain 3: Q.38, T.42, R.92 Chain 4: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.46, G-A-A.48 Chain j: S.86, T.89, R.90, R.113 Chain k: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.48: 22 residues within 4Å: Chain 4: Q.38, T.42, R.92 Chain 5: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.47, G-A-A.49 Chain k: S.86, T.89, R.90, R.113 Chain l: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available G-A-A.49: 21 residues within 4Å: Chain 5: Q.38, T.42, R.92 Chain 6: N.33, Q.34, T.37, Q.38, Q.39, I.94 Ligands: G-A-A.48 Chain l: S.86, T.89, R.90, R.113 Chain m: R.113, D.115, D.116, V.119, A.120, R.122, A.123 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pattanayek, R. et al., Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction. J.Mol.Biol. (1992)

Release Date

1994-07-31

Peptides

Coat protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklm

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
P

C
P

D
P

E
P

F
P

G
P

H
P

I
P

J
P

K
P

L
P

M
P

N
P

O
P

P
P

Q
P

R
P

S
P

T
P

U
P

V
P

W
P

X
P

Y
P

Z
P

0
P

1
P

2
P

3
P

4
P

5
P

6
P

7
P

8
P

9
P

a
P

b
P

c
P

d
P

e
P

f
P

g
P

h
P

i
P

j
P

k
P

l
P

m
P

Coat protein

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