SMTL ID : 1vyb.1 (1 other biounit)

Endonuclease domain of human LINE1 ORF2p

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.7, K.218, R.238 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.7, A:K.218, A:R.238 SO4.2: 4 residues within 4Å: Chain A: I.62, Y.63, Q.64, R.91 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.64, A:Q.64, A:Q.64 Water bridges: A:R.91 Salt bridges: A:R.91 SO4.3: 5 residues within 4Å: Chain A: N.16, G.17, L.18, N.19, H.45 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17, A:N.19, A:N.19 Water bridges: A:S.20, A:S.20 Salt bridges: A:H.45

1 x SO3: SULFITE ION(Non-covalent)

SO3.4: 3 residues within 4Å: Chain A: K.61, Y.63, P.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.61, A:Y.63

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: T.192, T.224, N.225, S.228, D.229, H.230, S.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.225, A:N.225, A:N.225 Water bridges: A:F.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weichenrieder, O. et al., Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon. Structure (2004)

Release Date

2004-06-04

Peptides

ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN

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