SMTL ID : 1vyi.1

Structure of the c-terminal domain of the polymerase cofactor of rabies virus: insights in function and evolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.32, R.33, S.34, L.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.32, A:R.33, A:L.92 GOL.2: 6 residues within 4Å: Chain A: Y.40, Q.44, N.85, S.86, K.87, K.88 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.40, A:Y.40, A:K.87, A:K.88 Water bridges: A:N.85 GOL.3: 1 residues within 4Å: Chain A: S.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.11 Water bridges: A:S.11 GOL.4: 1 residues within 4Å: Chain A: D.96 No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain A: G.61, V.62, T.63, R.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.61, A:T.63, A:R.64 Water bridges: A:T.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mavrakis, M. et al., Structure and Function of the C-Terminal Domain of the Polymerase Cofactor of Rabies Virus. J.Mol.Biol. (2004)

Release Date

2004-10-15

Peptides

RNA POLYMERASE ALPHA SUBUNIT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA POLYMERASE ALPHA SUBUNIT