SMTL ID : 1vza.1

THYMIDYLATE SYNTHASE E60D MUTANT BINARY COMPLEX WITH 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 15 residues within 4Å: Chain A: R.23, L.195, C.198, H.199, Q.217, R.218, S.219, A.220, D.221, G.225, N.229, H.259, Y.261 Chain B: R.178, R.179 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.199, A:Q.217, A:S.219, A:S.219, A:S.219, A:D.221, A:N.229, A:N.229, A:H.259, A:Y.261, B:R.178, B:R.178 Salt bridges: A:R.23, A:R.218, B:R.178, B:R.179 UMP.2: 15 residues within 4Å: Chain A: R.178, R.179 Chain B: R.23, L.195, C.198, H.199, Q.217, R.218, S.219, A.220, D.221, G.225, N.229, H.259, Y.261 17 PLIP interactions: 4 interactions with chain A, 13 interactions with chain B Hydrogen bonds: A:R.178, A:R.178, B:H.199, B:Q.217, B:S.219, B:S.219, B:S.219, B:D.221, B:N.229, B:N.229, B:H.259, B:Y.261 Salt bridges: A:R.178, A:R.179, B:R.23, B:R.218 Water bridges: B:D.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birdsall, D.L. et al., The separate effects of E60Q in Lactobacillus casei thymidylate synthase delineate between mechanisms for formation of intermediates in catalysis. Protein Eng. (1998)

Release Date

1997-03-12

Peptides

THYMIDYLATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

THYMIDYLATE SYNTHASE