SMTL ID : 1w0h.1

Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.16, D.116 Ligands: MG.2, AMP.3 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.16, A:D.116, H2O.1, H2O.10, AMP.3 MG.2: 6 residues within 4Å: Chain A: D.16, F.17, E.18, D.180 Ligands: MG.1, AMP.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: A:D.16, A:E.18, A:D.180, AMP.3, AMP.3

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 16 residues within 4Å: Chain A: D.16, F.17, E.18, A.19, T.20, C.21, E.22, F.67, L.71, T.72, D.116, F.120, H.175, D.180 Ligands: MG.1, MG.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.18, A:A.19, A:A.19, A:D.180 Water bridges: A:D.180 Salt bridges: A:H.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, Y. et al., Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp. J.Mol.Biol. (2004)

Release Date

2004-09-30

Peptides

3'-5' EXONUCLEASE ERI1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3'-5' EXONUCLEASE ERI1