SMTL ID : 1w1q.1

Plant Cytokinin Dehydrogenase in Complex with Isopentenyladenine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: P.130, P.131, R.132, N.134, D.143, G.145, R.237 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 35 residues within 4Å: Chain A: F.61, F.100, R.101, G.102, R.103, G.104, H.105, S.106, Q.110, A.111, M.121, T.168, D.169, Y.170, L.173, T.174, G.176, G.177, T.178, S.180, N.181, G.183, I.184, L.229, G.230, G.233, V.234, I.235, W.391, W.397, Y.491, L.492, S.527, Q.530 Ligands: ZIP.3 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:F.61, A:F.61, A:Y.170, A:Y.170, A:Y.170, A:L.173, A:W.391, A:W.397 Hydrogen bonds: A:F.100, A:G.102, A:R.103, A:G.104, A:H.105, A:H.105, A:S.106, A:Q.110, A:D.169, A:T.174, A:S.180, A:N.181, A:G.183, A:I.184, A:I.184, A:I.235, A:I.235, A:Y.491, A:Y.491, A:S.527, A:Q.530 Water bridges: A:S.106 pi-Stacking: A:W.397

1 x ZIP: N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE(Non-covalent)

ZIP.3: 10 residues within 4Å: Chain A: D.169, V.378, E.381, W.397, N.399, I.429, S.456, L.458, L.492 Ligands: FAD.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.397, A:L.492 Hydrogen bonds: A:D.169 Water bridges: A:E.381

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: T.59, N.63, I.64, T.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.63 Water bridges: A:D.60, A:I.64 NAG.5: 5 residues within 4Å: Chain A: S.86, N.89, S.90, H.207, G.208 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89 NAG.6: 3 residues within 4Å: Chain A: N.294, Q.295, N.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.294 Water bridges: A:N.294, A:A.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malito, E. et al., Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis. J.Mol.Biol. (2004)

Release Date

2004-08-26

Peptides

CYTOKININ DEHYDROGENASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOKININ DEHYDROGENASE 1

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