SMTL ID : 1w2l.1

Cytochrome c domain of caa3 oxygen oxidoreductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 24 residues within 4Å: Chain A: A.17, C.18, S.20, C.21, H.22, V.30, G.31, P.32, F.34, L.37, R.42, Y.56, L.57, S.60, I.61, K.67, V.68, V.69, Y.72, P.73, V.75, M.76, P.77, Y.80 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:P.32, A:F.34, A:L.37, A:Y.56, A:L.57, A:I.61, A:I.61, A:V.68, A:Y.72, A:V.75, A:P.77, A:Y.80, A:Y.80 Hydrogen bonds: A:Y.56, A:Y.56, A:V.69 Salt bridges: A:R.42 pi-Stacking: A:H.22 Metal complexes: A:H.22

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: P.32, R.42, V.69, Q.70, Y.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:R.42, A:Y.72 Water bridges: A:Y.72

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: Y.38, D.53, E.54 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.38, A:E.54 Water bridges: A:D.53, A:D.53, A:D.53, A:N.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srinivasan, V. et al., Structure at 1.3 A resolution of Rhodothermus marinus caa(3) cytochrome c domain. J. Mol. Biol. (2005)

Release Date

2005-01-19

Peptides

CYTOCHROME OXIDASE SUBUNIT II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME OXIDASE SUBUNIT II