SMTL ID : 1w37.1

2-keto-3-deoxygluconate(KDG) aldolase of Sulfolobus solfataricus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: F.239, G.240, S.241, L.242, S.243, I.264 Chain D: R.106, M.107, S.108, H.111 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain A Hydrogen bonds: D:R.106, D:S.108, D:S.108, A:S.241, A:L.242, A:S.243, A:S.243 Water bridges: A:F.265 GOL.2: 8 residues within 4Å: Chain B: G.240, S.241, L.242, S.243 Chain C: R.106, M.107, S.108, H.111 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:S.241, B:L.242, B:S.243, B:S.243, C:R.106, C:S.108, C:S.108 GOL.3: 1 residues within 4Å: Chain B: K.86 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.86, B:K.86 GOL.4: 5 residues within 4Å: Chain C: D.92, I.93, P.124, H.125, P.126 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.125 GOL.5: 5 residues within 4Å: Chain C: C.120, H.125, P.126, C.150, T.152 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.152, C:T.152 Water bridges: C:H.125, C:V.127 GOL.6: 10 residues within 4Å: Chain B: R.106, M.107, S.108, H.111 Chain C: F.239, G.240, S.241, L.242, S.243, I.264 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.241, C:L.242, C:S.243, C:S.243, B:S.108, B:S.108 Water bridges: C:S.241 GOL.7: 9 residues within 4Å: Chain A: R.106, M.107, S.108, H.111 Chain D: F.239, G.240, S.241, L.242, S.243 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:S.241, D:S.241, D:L.242, D:S.243, D:S.243, A:S.108, A:S.108 Water bridges: D:F.265 GOL.8: 4 residues within 4Å: Chain D: K.114, K.117, T.118, E.121 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 6 residues within 4Å: Chain D: P.7, G.42, T.43, T.44, Y.130, K.155 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.43, D:T.44, D:T.44, D:Y.130, D:K.155, D:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Theodossis, A. et al., The structural basis for substrate promiscuity in 2-keto-3-deoxygluconate aldolase from the Entner-Doudoroff pathway in Sulfolobus solfataricus. J. Biol. Chem. (2004)

Release Date

2004-09-02

Peptides

2-KETO-3-DEOXY GLUCONATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2-KETO-3-DEOXY GLUCONATE ALDOLASE

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