SMTL ID : 1w3g.1

Hemolytic lectin from the mushroom Laetiporus sulphureus complexed with two N-acetyllactosamine molecules.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-hexamer

Ligands

12 x NDG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-GAL.1: 13 residues within 4Å: Chain A: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 Chain C: P.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.123, A:H.125, A:Q.142, A:R.123, A:R.123 Water bridges: A:Q.127 NDG-GAL.2: 7 residues within 4Å: Chain A: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.75, A:N.94, A:R.75, A:R.75, A:Y.91, A:Y.91 NDG-GAL.7: 13 residues within 4Å: Chain A: P.38 Chain B: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.123, B:H.125, B:Q.142, B:R.123, B:R.123 Water bridges: B:Q.127 NDG-GAL.8: 7 residues within 4Å: Chain B: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.75, B:N.94, B:R.75, B:R.75, B:Y.91, B:Y.91 NDG-GAL.13: 13 residues within 4Å: Chain B: P.38 Chain C: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.123, C:H.125, C:Q.142, C:R.123, C:R.123 Water bridges: C:Q.127 NDG-GAL.14: 7 residues within 4Å: Chain C: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.75, C:N.94, C:R.75, C:R.75, C:Y.91, C:Y.91 NDG-GAL.19: 13 residues within 4Å: Chain D: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 Chain F: P.38 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.123, D:H.125, D:Q.142, D:R.123, D:R.123 Water bridges: D:H.133, D:Q.127 NDG-GAL.20: 7 residues within 4Å: Chain D: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.75, D:D.93, D:N.94, D:R.75, D:R.75, D:Y.91 NDG-GAL.25: 13 residues within 4Å: Chain D: P.38 Chain E: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.123, E:H.125, E:Q.142, E:R.123, E:R.123 Water bridges: E:H.133, E:Q.127 NDG-GAL.26: 7 residues within 4Å: Chain E: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.75, E:D.93, E:N.94, E:R.75, E:R.75, E:Y.91 NDG-GAL.31: 13 residues within 4Å: Chain E: P.38 Chain F: R.76, Y.81, V.121, R.123, H.125, L.126, P.128, W.131, H.133, F.139, D.141, Q.142 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.123, F:H.125, F:Q.142, F:R.123, F:R.123 Water bridges: F:H.133, F:Q.127 NDG-GAL.32: 7 residues within 4Å: Chain F: F.73, R.75, P.80, I.85, Y.91, D.93, N.94 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.75, F:D.93, F:N.94, F:R.75, F:R.75, F:Y.91

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: F.25, R.27, S.37, D.45, Q.46 Chain B: E.137, F.139 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: T.197, T.245, F.246, S.247 Chain B: T.205 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP GOL.9: 7 residues within 4Å: Chain B: F.25, R.27, S.37, D.45, Q.46 Chain C: E.137, F.139 Ligand excluded by PLIP GOL.10: 7 residues within 4Å: Chain B: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain B: T.197, T.245, F.246, S.247 Chain C: T.205 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain B: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain A: E.137, F.139 Chain C: F.25, R.27, S.37, D.45, Q.46 Ligand excluded by PLIP GOL.16: 7 residues within 4Å: Chain C: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain A: T.205 Chain C: T.197, T.245, F.246, S.247 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain C: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP GOL.21: 7 residues within 4Å: Chain D: F.25, R.27, S.37, D.45, Q.46 Chain E: E.137, F.139 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain D: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain D: T.197, T.245, F.246, S.247 Chain E: T.205 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain D: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP GOL.27: 7 residues within 4Å: Chain E: F.25, R.27, S.37, D.45, Q.46 Chain F: E.137, F.139 Ligand excluded by PLIP GOL.28: 7 residues within 4Å: Chain E: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.29: 5 residues within 4Å: Chain E: T.197, T.245, F.246, S.247 Chain F: T.205 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain E: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP GOL.33: 7 residues within 4Å: Chain D: E.137, F.139 Chain F: F.25, R.27, S.37, D.45, Q.46 Ligand excluded by PLIP GOL.34: 7 residues within 4Å: Chain F: D.150, M.151, S.152, I.153, T.214, A.215, K.286 Ligand excluded by PLIP GOL.35: 5 residues within 4Å: Chain D: T.205 Chain F: T.197, T.245, F.246, S.247 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain F: D.41, Q.42, T.44, Y.47, K.66, S.287 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mancheno, J.M. et al., Structural Analysis of the Laetiporus Sulphureus Hemolytic Pore-Forming Lectin in Complex with Sugars. J.Biol.Chem. (2005)

Release Date

2005-02-01

Peptides

HEMOLYTIC LECTIN FROM LAETIPORUS SULPHUREUS: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HEMOLYTIC LECTIN FROM LAETIPORUS SULPHUREUS

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