SMTL ID : 1w3p.1

NimA from D. radiodurans with a His71-Pyruvate residue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PYR: PYRUVIC ACID(Covalent)

PYR.1: 7 residues within 4Å: Chain A: A.79, H.92, L.156, S.157, V.160, F.161 Chain B: L.128 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.79, A:V.160, A:F.161 Salt bridges: A:H.92 Water bridges: B:V.130 PYR.3: 7 residues within 4Å: Chain A: L.128 Chain B: A.79, H.92, L.156, S.157, V.160, F.161 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:V.130 Hydrophobic interactions: B:A.79, B:V.160, B:F.161 Salt bridges: B:H.92

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: V.60, T.62, Y.91, T.93, R.100, H.107 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.60, A:Y.91, A:T.93 Hydrogen bonds: A:Y.91 Salt bridges: A:R.100, A:H.107 ACT.4: 6 residues within 4Å: Chain B: V.60, T.62, Y.91, T.93, R.100, H.107 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.60, B:Y.91, B:T.93 Hydrogen bonds: B:T.62 Salt bridges: B:R.100, B:H.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiros, H.-K.S. et al., Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans. J.Biol.Chem. (2004)

Release Date

2004-10-18

Peptides

NIMA-RELATED PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NIMA-RELATED PROTEIN

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