- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FMT: FORMIC ACID(Non-functional Binders)
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.245, H2O.10, H2O.12, H2O.12, H2O.12, H2O.12
MG.6: 3 residues within 4Å:- Chain B: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:E.245, H2O.23, H2O.23, H2O.25, H2O.25, H2O.25
MG.7: 1 residues within 4Å:- Chain B: N.49
No protein-ligand interaction detected (PLIP)MG.11: 3 residues within 4Å:- Chain C: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.245, H2O.37, H2O.39, H2O.39, H2O.39, H2O.39
MG.15: 3 residues within 4Å:- Chain D: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:E.245, H2O.50, H2O.50, H2O.52, H2O.52, H2O.52
MG.16: 1 residues within 4Å:- Chain D: N.49
No protein-ligand interaction detected (PLIP)MG.20: 3 residues within 4Å:- Chain E: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain E, 5 Ligand-Water interactions- Metal complexes: E:E.245, H2O.63, H2O.65, H2O.65, H2O.65, H2O.65
MG.24: 3 residues within 4Å:- Chain F: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain F, 5 Ligand-Water interactions- Metal complexes: F:E.245, H2O.77, H2O.77, H2O.78, H2O.78, H2O.78
MG.25: 1 residues within 4Å:- Chain F: N.49
No protein-ligand interaction detected (PLIP)MG.29: 3 residues within 4Å:- Chain G: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain G, 5 Ligand-Water interactions- Metal complexes: G:E.245, H2O.90, H2O.92, H2O.92, H2O.92, H2O.92
MG.33: 3 residues within 4Å:- Chain H: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain H, 5 Ligand-Water interactions- Metal complexes: H:E.245, H2O.103, H2O.103, H2O.105, H2O.105, H2O.105
MG.34: 1 residues within 4Å:- Chain H: N.49
No protein-ligand interaction detected (PLIP)- 8 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.129, C.131, D.139, S.175
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:C.129, A:C.131, H2O.14, H2O.14
ZN.8: 4 residues within 4Å:- Chain B: C.129, C.131, D.139, S.175
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.129, B:C.131, B:D.139, H2O.27
ZN.12: 4 residues within 4Å:- Chain C: C.129, C.131, D.139, S.175
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:C.129, C:C.131, H2O.41, H2O.41
ZN.17: 4 residues within 4Å:- Chain D: C.129, C.131, D.139, S.175
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:C.129, D:C.131, D:D.139, H2O.54
ZN.21: 4 residues within 4Å:- Chain E: C.129, C.131, D.139, S.175
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:C.129, E:C.131, H2O.67, H2O.67
ZN.26: 4 residues within 4Å:- Chain F: C.129, C.131, D.139, S.175
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:C.129, F:C.131, F:D.139, H2O.80
ZN.30: 4 residues within 4Å:- Chain G: C.129, C.131, D.139, S.175
4 PLIP interactions:2 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:C.129, G:C.131, H2O.94, H2O.94
ZN.35: 4 residues within 4Å:- Chain H: C.129, C.131, D.139, S.175
4 PLIP interactions:3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:C.129, H:C.131, H:D.139, H2O.107
- 8 x K: POTASSIUM ION(Non-covalent)
K.4: 3 residues within 4Å:- Chain A: L.27
- Chain D: D.37, D.319
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.37, D:D.319, H2O.2, H2O.2
K.9: 3 residues within 4Å:- Chain B: L.27
- Chain E: D.37, D.319
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:D.37, E:D.319, H2O.16, H2O.17
K.13: 3 residues within 4Å:- Chain C: L.27
- Chain H: D.37, D.319
4 PLIP interactions:2 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: H:D.37, H:D.319, H2O.29, H2O.29
K.18: 3 residues within 4Å:- Chain A: D.37, D.319
- Chain D: L.27
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.37, A:D.319, H2O.43, H2O.43
K.22: 3 residues within 4Å:- Chain B: D.37, D.319
- Chain E: L.27
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.37, B:D.319, H2O.55, H2O.56
K.27: 3 residues within 4Å:- Chain F: L.27
- Chain G: D.37, D.319
4 PLIP interactions:2 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:D.37, G:D.319, H2O.70, H2O.70
K.31: 3 residues within 4Å:- Chain F: D.37, D.319
- Chain G: L.27
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:D.37, F:D.319, H2O.82, H2O.82
K.36: 3 residues within 4Å:- Chain C: D.37, D.319
- Chain H: L.27
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.37, C:D.319, H2O.96, H2O.97
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Tracking the Evolution of Porphobilinogen Synthase Metal Dependence in Vitro. J.Mol.Biol. (2005)
- Release Date
- 2005-01-19
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FMT: FORMIC ACID(Non-functional Binders)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Tracking the Evolution of Porphobilinogen Synthase Metal Dependence in Vitro. J.Mol.Biol. (2005)
- Release Date
- 2005-01-19
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B