- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: R.26, L.27
- Chain D: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: D:D.37, D:D.319, A:L.27, H2O.2, H2O.2
K.6: 5 residues within 4Å:- Chain B: R.26, L.27
- Chain E: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain E, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: E:D.37, E:D.319, B:L.27, H2O.15, H2O.15
K.10: 5 residues within 4Å:- Chain C: R.26, L.27
- Chain H: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: H:D.37, H:D.319, C:L.27, H2O.27, H2O.27
K.14: 5 residues within 4Å:- Chain A: D.36, D.37, D.319
- Chain D: R.26, L.27
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: A:D.37, A:D.319, D:L.27, H2O.40, H2O.40
K.18: 5 residues within 4Å:- Chain B: D.36, D.37, D.319
- Chain E: R.26, L.27
5 PLIP interactions:1 interactions with chain E, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: E:L.27, B:D.37, B:D.319, H2O.52, H2O.52
K.22: 5 residues within 4Å:- Chain F: R.26, L.27
- Chain G: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain G, 1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: G:D.37, G:D.319, F:L.27, H2O.65, H2O.65
K.26: 5 residues within 4Å:- Chain F: D.36, D.37, D.319
- Chain G: R.26, L.27
5 PLIP interactions:1 interactions with chain G, 2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: G:L.27, F:D.37, F:D.319, H2O.77, H2O.77
K.30: 5 residues within 4Å:- Chain C: D.36, D.37, D.319
- Chain H: R.26, L.27
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: C:D.37, C:D.319, H:L.27, H2O.90, H2O.90
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.245, H2O.8, H2O.8, H2O.10, H2O.10, H2O.11
MG.7: 3 residues within 4Å:- Chain B: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:E.245, H2O.22, H2O.22, H2O.24, H2O.24, H2O.24
MG.11: 3 residues within 4Å:- Chain C: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.245, H2O.34, H2O.34, H2O.36, H2O.36, H2O.36
MG.15: 3 residues within 4Å:- Chain D: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:E.245, H2O.47, H2O.47, H2O.49, H2O.49, H2O.49
MG.19: 3 residues within 4Å:- Chain E: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain E, 5 Ligand-Water interactions- Metal complexes: E:E.245, H2O.59, H2O.59, H2O.61, H2O.61, H2O.61
MG.23: 3 residues within 4Å:- Chain F: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain F, 5 Ligand-Water interactions- Metal complexes: F:E.245, H2O.72, H2O.72, H2O.74, H2O.74, H2O.74
MG.27: 3 residues within 4Å:- Chain G: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain G, 5 Ligand-Water interactions- Metal complexes: G:E.245, H2O.84, H2O.84, H2O.86, H2O.86, H2O.86
MG.31: 3 residues within 4Å:- Chain H: R.181, E.245, D.249
6 PLIP interactions:1 interactions with chain H, 5 Ligand-Water interactions- Metal complexes: H:E.245, H2O.98, H2O.98, H2O.99, H2O.99, H2O.99
- 8 x ZN: ZINC ION(Non-covalent)
ZN.4: 3 residues within 4Å:- Chain A: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.129, A:C.131, A:C.139, H2O.13
ZN.8: 3 residues within 4Å:- Chain B: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.129, B:C.131, B:C.139, H2O.26
ZN.12: 3 residues within 4Å:- Chain C: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:C.129, C:C.131, C:C.139, H2O.38
ZN.16: 3 residues within 4Å:- Chain D: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:C.129, D:C.131, D:C.139, H2O.51
ZN.20: 3 residues within 4Å:- Chain E: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:C.129, E:C.131, E:C.139, H2O.63
ZN.24: 3 residues within 4Å:- Chain F: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:C.129, F:C.131, F:C.139, H2O.76
ZN.28: 3 residues within 4Å:- Chain G: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:C.129, G:C.131, G:C.139, H2O.88
ZN.32: 3 residues within 4Å:- Chain H: C.129, C.131, C.139
4 PLIP interactions:3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:C.129, H:C.131, H:C.139, H2O.101
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Tracking the Evolution of Porphobilinogen Synthase Metal Dependence in Vitro. J.Mol.Biol. (2005)
- Release Date
- 2005-01-19
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Tracking the Evolution of Porphobilinogen Synthase Metal Dependence in Vitro. J.Mol.Biol. (2005)
- Release Date
- 2005-01-19
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B