SMTL ID : 1w5y.1

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x BE6: (2R,3R,4R,5R)-2,5-BIS[(2,5-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXANEDIAMIDE(Non-covalent)

BE6.1: 30 residues within 4Å: Chain A: R.19, L.34, D.36, G.38, A.39, D.40, D.41, V.43, I.58, G.59, G.60, I.61, P.92, V.93, I.95 Chain B: R.19, L.34, D.36, G.38, A.39, D.40, D.41, V.43, I.58, G.59, G.60, I.61, P.92, V.93, I.95 24 PLIP interactions: 11 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.34, A:A.39, A:D.41, A:V.43, A:I.58, A:V.93, B:L.34, B:A.39, B:D.41, B:V.43, B:I.58, B:I.61, B:V.93 Hydrogen bonds: A:R.19, A:G.38, A:G.38, A:D.40, A:I.61, B:D.36, B:G.38, B:G.38, B:D.40 Water bridges: B:I.61, B:I.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindberg, J. et al., Symmetric Fluoro-Substituted Diol-Based HIV Protease Inhibitors. Ortho-Fluorinated and Meta-Fluorinated P1/P1'-Benzyloxy Side Groups Significantly Improve the Antiviral Activity and Preserve Binding Efficacy. Eur.J.Biochem. (2004)

Release Date

2004-10-07

Peptides

POL POLYPROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL POLYPROTEIN

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