SMTL ID : 1w5z.1

AGAO covalent complex with Benzylhydrazine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.12, H2O.18 CU.11: 3 residues within 4Å: Chain B: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.31, H2O.38

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.580, A:I.580 NA.12: 6 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.438, B:D.579, B:I.580

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, E.345, Y.385 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.316, A:I.349 Water bridges: B:H.343, B:Y.385, B:Y.385, B:Y.385, B:K.399 Salt bridges: B:H.343, B:K.399, A:R.365 SO4.4: 4 residues within 4Å: Chain A: R.59, D.546, D.547, R.549 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.549 SO4.5: 3 residues within 4Å: Chain A: T.231, G.232, G.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.232 Water bridges: A:G.233 SO4.13: 9 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, E.345, Y.385 Chain B: G.348, I.349, R.365 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.316, B:I.349 Water bridges: A:Y.385, A:K.399 Salt bridges: A:H.343, A:K.399, B:R.365 SO4.14: 4 residues within 4Å: Chain B: R.59, D.546, D.547, R.549 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.549 SO4.15: 3 residues within 4Å: Chain B: T.231, G.232, G.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.232 Water bridges: B:G.233

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 15 residues within 4Å: Chain A: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.551, A:H.559, A:S.560, A:A.563 Water bridges: A:A.533 GOL.7: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.159, A:V.195 Water bridges: A:V.195 GOL.8: 11 residues within 4Å: Chain A: K.240, R.617, S.618, P.619, V.620, L.621, D.622 Chain B: L.207, T.208, G.209, R.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.618, A:L.621, A:D.622 Water bridges: A:R.617 GOL.9: 7 residues within 4Å: Chain A: Q.517, L.588, D.603, T.604 Chain B: H.513, K.608, R.610 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Water bridges: B:K.608, A:Q.517 Hydrogen bonds: A:D.603, A:D.603, A:T.604, A:T.604 GOL.10: 6 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497, E.499 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.442, A:F.444, A:T.445, A:N.497 GOL.16: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.551, B:H.559, B:S.560, B:A.563 Water bridges: B:A.533 GOL.17: 7 residues within 4Å: Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.159, B:V.195 Water bridges: B:V.195 GOL.18: 11 residues within 4Å: Chain A: L.207, T.208, G.209, R.212 Chain B: K.240, R.617, S.618, P.619, V.620, L.621, D.622 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.618, B:L.621, B:D.622 Water bridges: B:R.617 GOL.19: 7 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: Q.517, L.588, D.603, T.604 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.603, B:D.603, B:T.604 Water bridges: B:Q.517, B:D.603, A:K.608 GOL.20: 6 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497, E.499 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.442, B:F.444, B:T.445, B:N.497 Water bridges: B:E.499

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langley, D.B. et al., Complexes of the Copper-Containing Amine Oxidase from Arthrobacter Globiformis with the Inhibitors Benzylhydrazine and Tranylcypromine. Acta Crystallogr.,Sect.F (2008)

Release Date

2005-12-08

Peptides

PHENYLETHYLAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PHENYLETHYLAMINE OXIDASE

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