SMTL ID : 1w6s.1

The high resolution structure of methanol dehydrogenase from methylobacterium extorquens

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.1: 19 residues within 4Å: Chain A: E.55, C.103, C.104, V.107, R.109, T.159, S.174, G.175, A.176, E.177, T.241, W.243, N.261, R.331, N.394, W.476, G.539, W.540 Ligands: CA.4 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.243, A:W.540 Hydrogen bonds: A:R.109, A:S.174, A:G.175, A:A.176, A:R.331, A:R.331, A:N.394, A:W.540 Water bridges: A:E.177, A:E.177, A:T.241, A:T.241 Salt bridges: A:R.109, A:R.109 pi-Stacking: A:W.243 PQQ.5: 20 residues within 4Å: Chain C: E.55, C.103, C.104, V.107, R.109, T.159, S.174, G.175, A.176, E.177, T.241, W.243, N.261, D.303, R.331, N.394, W.476, G.539, W.540 Ligands: CA.7 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:W.243, C:W.540 Hydrogen bonds: C:R.109, C:T.159, C:S.174, C:G.175, C:A.176, C:T.241, C:R.331, C:R.331, C:N.394, C:N.394, C:W.540 Water bridges: C:E.177, C:E.177 Salt bridges: C:R.109, C:R.109

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: A.43, G.582, G.584, P.585, Y.586, D.587 Chain C: R.41, W.508, K.509, F.510 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.584, A:Y.586, A:D.587 Water bridges: A:A.43, C:K.38, C:R.41, C:K.509 GOL.3: 6 residues within 4Å: Chain A: H.525, T.528, Y.530, K.583, G.584, P.585 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.530 Water bridges: A:D.81, A:T.528 GOL.6: 9 residues within 4Å: Chain A: W.508, K.509, F.510 Chain C: A.43, G.582, G.584, P.585, Y.586, D.587 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:G.584, C:Y.586, A:K.509 Water bridges: A:K.509

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: E.177, N.261, D.303 Ligands: PQQ.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.177, A:E.177 CA.7: 4 residues within 4Å: Chain C: E.177, N.261, D.303 Ligands: PQQ.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.177, C:E.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, P.A. et al., The Atomic Resolution Structure of Methanol Dehydrogenase from Methylobacterium Extorquens. Acta Crystallogr.,Sect.D (2005)

Release Date

2004-12-21

Peptides

METHANOL DEHYDROGENASE SUBUNIT 1: AC
METHANOL DEHYDROGENASE SUBUNIT 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

METHANOL DEHYDROGENASE SUBUNIT 1

METHANOL DEHYDROGENASE SUBUNIT 2

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