SMTL ID : 1w80.1

Crystal structure of the alpha-adaptin appendage domain, from the AP2 adaptor complex, bound to 2 peptides from Synaptojanin170

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 3 residues within 4Å: Chain A: K.169, H.170, P.171 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.171 Hydrogen bonds: A:K.169, A:H.170

3 x CO3: CARBONATE ION(Non-functional Binders)

CO3.2: 4 residues within 4Å: Chain A: K.153, S.156, R.232 Chain C: K.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.232, A:R.232 Water bridges: A:W.152 CO3.3: 2 residues within 4Å: Chain A: R.43, Q.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.43 Water bridges: A:Q.44 CO3.4: 2 residues within 4Å: Chain A: N.31, Q.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.31

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.5: 5 residues within 4Å: Chain A: E.41, F.42, L.46, G.47, R.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.41, A:R.48

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: P.11, G.12, S.13, E.14, D.15 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:E.14, A:D.15, A:D.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Praefcke, G.J.K. et al., Evolving Nature of the Ap2 Alpha-Appendage Hub During Clathrin-Coated Vesicle Endocytosis. Embo J. (2004)

Release Date

2004-10-27

Peptides

ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 2 SUBUNIT: A
SYNAPTOJANIN 1: B
SYNAPTOJANIN 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
P

C
Q

ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 2 SUBUNIT

SYNAPTOJANIN 1

SYNAPTOJANIN 1

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