SMTL ID : 1w8d.1

BINARY STRUCTURE OF HUMAN DECR.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.23, F.24, K.27, S.253, D.254 Chain B: L.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.27, A:D.254 GOL.5: 4 residues within 4Å: Chain D: R.58, Q.82, D.84, M.90 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.82 Water bridges: D:Q.82

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 23 residues within 4Å: Chain A: G.33, T.36, G.37, L.38, S.57, R.58, K.59, C.83, D.84, V.85, R.86, N.111, A.112, A.113, I.134, I.162, T.163, K.181, P.207, G.208, P.209, I.210, T.212 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.38 Hydrogen bonds: A:T.36, A:L.38, A:S.57, A:R.58, A:K.59, A:D.84, A:V.85, A:N.111, A:A.113, A:K.181, A:I.210, A:T.212 Water bridges: A:G.35, A:S.57 Salt bridges: A:R.58, A:K.59 NAP.3: 23 residues within 4Å: Chain B: G.33, T.36, G.37, L.38, S.57, R.58, K.59, C.83, D.84, V.85, R.86, N.111, A.112, A.113, I.134, I.162, T.163, T.164, K.181, P.207, G.208, P.209, I.210 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:T.36, B:T.36, B:L.38, B:S.57, B:R.58, B:R.58, B:K.59, B:D.84, B:D.84, B:V.85, B:N.111, B:A.113, B:K.181, B:I.210 Water bridges: B:G.35, B:K.181 Salt bridges: B:R.58, B:K.59 NAP.4: 23 residues within 4Å: Chain C: G.33, T.36, G.37, L.38, S.57, R.58, K.59, C.83, D.84, V.85, R.86, N.111, A.112, A.113, I.134, I.162, T.163, K.181, P.207, G.208, P.209, I.210, T.212 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:T.36, C:T.36, C:T.36, C:L.38, C:S.57, C:R.58, C:K.59, C:D.84, C:V.85, C:N.111, C:A.113, C:K.181, C:I.210, C:T.212 Water bridges: C:G.35 Salt bridges: C:R.58, C:K.59 pi-Cation interactions: C:R.58 NAP.6: 24 residues within 4Å: Chain D: G.33, T.36, G.37, L.38, S.57, R.58, K.59, C.83, D.84, V.85, R.86, N.111, A.112, A.113, I.134, I.162, T.163, T.164, K.181, P.207, G.208, P.209, I.210, T.212 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:T.36, D:T.36, D:T.36, D:L.38, D:S.57, D:R.58, D:R.58, D:K.59, D:D.84, D:D.84, D:V.85, D:N.111, D:A.113, D:K.181, D:I.210, D:I.210 Water bridges: D:K.181 Salt bridges: D:R.58, D:K.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alphey, M.S. et al., Structure and Reactivity of Human Mitochondrial 2,4-Dienoyl-Coa Reductase: Enzyme-Ligand Interactions in a Distinctive Short-Chain Reductase Active Site. J.Biol.Chem. (2005)

Release Date

2004-10-28

Peptides

2,4-DIENOYL-COA REDUCTASE, MITOCHONDRIAL PRECURSOR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2,4-DIENOYL-COA REDUCTASE, MITOCHONDRIAL PRECURSOR

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