SMTL ID : 1w8n.1

Contribution of the Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase from Micromonospora viridifaciens.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 6 residues within 4Å: Chain A: E.476, H.493, W.496, R.526, E.532, Y.589 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.476, A:H.493, A:R.526, A:R.526

1 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.2: 12 residues within 4Å: Chain A: R.22, I.23, R.41, D.85, F.109, F.157, F.188, D.213, E.214, R.230, R.296, Y.324 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.23, A:F.157 Hydrogen bonds: A:R.41, A:D.85, A:E.214, A:R.230, A:Y.324 Water bridges: A:R.22, A:A.47, A:R.230 Salt bridges: A:R.22, A:R.230, A:R.296

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: N.482, D.485, N.487, T.490, A.593, E.594 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.487, A:T.490, A:T.490, A:T.490

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, J.N. et al., Contribution of the Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase from Micromonospora Viridifaciens. FEBS Lett. (2004)

Release Date

2004-09-30

Peptides

BACTERIAL SIALIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BACTERIAL SIALIDASE

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