SMTL ID : 1w8s.2 (1 other biounit)

The mechanism of the Schiff Base Forming Fructose-1,6-bisphosphate Aldolase: Structural analysis of reaction intermediates

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-pentamer

Ligands

5 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.1: 15 residues within 4Å: Chain A: A.22, D.24, H.25, E.28, H.29, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.24, A:K.177, A:G.203, A:G.204, A:G.204, A:G.204, A:G.231, A:R.232 Water bridges: A:K.177, A:K.177, A:R.232, A:R.232, A:N.233 Salt bridges: A:H.25, A:H.29, A:R.148, A:K.179, A:R.232, A:R.232 FBP.2: 16 residues within 4Å: Chain B: A.22, D.24, H.25, E.28, H.29, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:D.24, B:K.177, B:G.203, B:G.204, B:G.204, B:G.204, B:G.231, B:R.232 Water bridges: B:K.78, B:K.177, B:K.177, B:K.179, B:K.179, B:R.232, B:R.232, B:R.232, B:N.233 Salt bridges: B:H.25, B:H.29, B:R.148, B:K.179, B:R.232, B:R.232 FBP.3: 16 residues within 4Å: Chain C: A.22, D.24, H.25, E.28, H.29, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:D.24, C:K.177, C:G.203, C:G.204, C:G.204, C:G.204, C:G.231, C:R.232, C:R.232 Water bridges: C:E.28, C:E.28, C:R.148, C:R.148, C:K.177, C:K.179, C:R.232, C:N.233 Salt bridges: C:H.25, C:H.29, C:R.148, C:K.179, C:R.232 FBP.4: 16 residues within 4Å: Chain D: A.22, D.24, H.25, E.28, H.29, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 26 PLIP interactions: 26 interactions with chain D Hydrogen bonds: D:D.24, D:K.177, D:G.203, D:G.204, D:G.204, D:G.204, D:G.231, D:R.232 Water bridges: D:E.28, D:R.148, D:R.148, D:R.148, D:K.177, D:K.177, D:K.179, D:K.179, D:R.232, D:R.232, D:R.232, D:N.233 Salt bridges: D:H.25, D:H.29, D:R.148, D:K.179, D:R.232, D:R.232 FBP.5: 16 residues within 4Å: Chain E: A.22, D.24, H.25, E.28, H.29, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 19 PLIP interactions: 19 interactions with chain E Hydrogen bonds: E:D.24, E:K.177, E:G.203, E:G.204, E:G.204, E:G.204, E:G.231, E:R.232 Water bridges: E:K.78, E:R.148, E:R.232, E:R.232, E:N.233 Salt bridges: E:H.25, E:H.29, E:R.148, E:K.179, E:R.232, E:R.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorentzen, E. et al., Mechanism of the Schiff base forming fructose-1,6-bisphosphate aldolase: structural analysis of reaction intermediates. Biochemistry (2005)

Release Date

2005-03-23

Peptides

FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS I: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS I

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