SMTL ID : 1w9j.1

Myosin II Dictyostelium discoideum motor domain S456Y bound with MgADP-AlF4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.186, S.237 Ligands: ADP.2, ALF.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.186, A:S.237, H2O.9, H2O.15

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 16 residues within 4Å: Chain A: I.115, N.127, P.128, F.129, K.130, Y.135, G.182, A.183, G.184, K.185, T.186, E.187, N.233, N.235 Ligands: MG.1, ALF.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.127, A:Y.135, A:G.182, A:A.183, A:G.184, A:K.185, A:T.186, A:E.187, A:N.233, A:N.235 Water bridges: A:E.187, A:E.187, A:N.188, A:N.188, A:N.235, A:S.237, A:S.237, A:S.237, A:G.457 Salt bridges: A:K.185

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 11 residues within 4Å: Chain A: S.181, G.182, K.185, N.233, S.236, S.237, I.455, Y.456, G.457 Ligands: MG.1, ADP.2 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: R.238, L.262, L.263, E.264, E.467, I.471 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.238 EDO.5: 7 residues within 4Å: Chain A: L.27, T.28, S.30, K.32, Y.34, P.82, I.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.28, A:I.83 EDO.6: 5 residues within 4Å: Chain A: K.265, G.427, R.428, L.431 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.263, A:K.265 EDO.7: 6 residues within 4Å: Chain A: D.515, L.516, P.522, P.523, G.524, N.555 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.522, A:N.555 EDO.8: 5 residues within 4Å: Chain A: R.428, D.590, L.592, R.620 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.428 Water bridges: A:A.424, A:D.590, A:D.590, A:D.590

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morris, C.A. et al., Structure-Function Analysis of Myosin II Backdoor Mutants. To be Published

Release Date

2006-03-16

Peptides

MYOSIN II HEAVY CHAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOSIN II HEAVY CHAIN