SMTL ID : 1wco.1

The solution structure of the nisin-lipid II complex

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x ALA- FGA- LYS- DAL- DAL: ALA-FGA-LYS-DAL-DAL PEPTIDE(Non-covalent)

ALA-FGA-LYS-DAL-DAL.1: 11 residues within 4Å: Chain A: I.1, T.2, P.9, G.10, T.13, G.14, A.15, L.16 Ligands: MUB-NAG.2, MUB-NAG.2, FDF.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.16

1 x MUB- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid(Non-covalent)

MUB-NAG.2: 10 residues within 4Å: Chain A: I.1, T.2, I.4, S.5 Ligands: ALA-FGA-LYS-DAL-DAL.1, ALA-FGA-LYS-DAL-DAL.1, ALA-FGA-LYS-DAL-DAL.1, ALA-FGA-LYS-DAL-DAL.1, ALA-FGA-LYS-DAL-DAL.1, FDF.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.4, A:I.4, A:I.4

1 x FDF: (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate(Non-covalent)

FDF.3: 13 residues within 4Å: Chain A: I.1, T.2, A.3, I.4, S.5, L.6, C.7, T.8, P.9, G.10 Ligands: ALA-FGA-LYS-DAL-DAL.1, ALA-FGA-LYS-DAL-DAL.1, MUB-NAG.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.6, A:P.9 Hydrogen bonds: A:I.4, A:L.6, A:L.6, A:G.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, S.T. et al., The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics. Nat. Struct. Mol. Biol. (2004)

Release Date

2005-03-07

Peptides

Lantibiotic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

Lantibiotic