SMTL ID : 1wd4.1

Crystal structure of arabinofuranosidase complexed with arabinose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.157, N.185, T.187, T.412, K.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.413 Water bridges: A:Q.414

3 x AHR: alpha-L-arabinofuranose(Non-covalent)

AHR.2: 13 residues within 4Å: Chain A: C.159, C.160, D.162, M.178, W.189, D.202, E.204, N.205, N.206, L.207, G.278, G.279, D.280 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.202, A:E.204, A:E.204, A:N.205, A:N.206, A:N.206, A:G.279, A:D.280 AHR.3: 7 residues within 4Å: Chain A: R.398, H.399, Y.400, N.401, F.402, Q.414, D.418 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.398, A:H.399, A:N.401, A:F.402, A:Q.414, A:D.418 AHR.4: 9 residues within 4Å: Chain A: T.339, Y.342, R.445, H.446, Y.447, E.448, N.449, S.467, D.471 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.445, A:H.446, A:E.448, A:N.449, A:N.449, A:S.467, A:D.471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyanaga, A. et al., Crystal structure of a family 54 alpha-L-arabinofuranosidase reveals a novel carbohydrate-binding module that can bind arabinose. J.Biol.Chem. (2004)

Release Date

2004-09-14

Peptides

alpha-L-arabinofuranosidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-L-arabinofuranosidase B

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