SMTL ID : 1wdl.1

fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form II (native4)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 15 residues within 4Å: Chain A: G.321, A.322, I.324, M.325, D.344, I.345, A.400, V.401, V.402, E.403, K.408, V.411, N.428, T.429, S.430 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.322, A:A.322, A:I.324, A:M.325, A:N.346, A:V.401, A:E.403, A:K.408, A:N.428, A:S.430 NAD.5: 18 residues within 4Å: Chain B: G.321, A.322, I.324, M.325, D.344, I.345, N.346, A.400, V.401, V.402, E.403, K.408, V.411, N.428, T.429, S.430, F.452, N.454 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:N.454 Hydrogen bonds: B:A.322, B:A.322, B:I.324, B:M.325, B:I.345, B:N.346, B:V.401, B:E.403, B:E.403, B:K.408, B:N.428, B:S.430

3 x N8E: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL(Non-covalent)

N8E.2: 14 residues within 4Å: Chain A: T.431, N.454, M.459, N.501, M.535, L.540, V.543, V.544, T.548, G.552, V.659, Y.660, G.663, L.666 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.431, A:V.544, A:T.548 N8E.3: 20 residues within 4Å: Chain A: R.34, N.38, R.41, G.68, A.69, F.74, N.77, F.78, G.88, N.89, E.91, A.92, G.116, G.117, E.120, E.140, L.143, G.148, F.149, F.278 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.143, A:F.149 Hydrogen bonds: A:N.38 N8E.4: 5 residues within 4Å: Chain A: I.345, L.386, N.404, V.407 Chain B: N.393 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.390 Hydrophobic interactions: A:V.407

2 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.6: 7 residues within 4Å: Chain C: L.222, L.225, F.229, A.238, G.239, S.242, I.244 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.244, C:I.244 Hydrogen bonds: C:G.239 ACO.7: 18 residues within 4Å: Chain D: C.94, M.129, M.150, H.176, R.214, T.217, L.222, L.225, A.228, F.229, A.238, S.242, M.283, A.313, F.314, H.346, F.348, C.376 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:A.228, D:F.229, D:A.238, D:A.313 Hydrogen bonds: D:R.214, D:R.214, D:T.217, D:S.221 pi-Cation interactions: D:R.214, D:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishikawa, M. et al., Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex. Embo J. (2004)

Release Date

2004-07-27

Peptides

Fatty oxidation complex alpha subunit: AB
3-ketoacyl-CoA thiolase: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fatty oxidation complex alpha subunit

3-ketoacyl-CoA thiolase

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