SMTL ID : 1wek.1

Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: S.45, A.46, G.140, G.141, F.142, G.143, T.144 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Water bridges: B:Q.156, B:Q.156, B:A.188, A:S.45, A:R.47, A:R.47 Hydrogen bonds: A:A.46, A:G.141, A:G.143, A:T.144 PO4.2: 8 residues within 4Å: Chain F: F.43, S.45, A.46, G.140, G.141, F.142, G.143, T.144 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:S.45, F:A.46, F:G.141, F:G.141, F:G.143, F:T.144, F:T.144 Water bridges: F:F.142, F:F.142 PO4.3: 9 residues within 4Å: Chain B: G.44, S.45, A.46, M.81, G.140, G.141, F.142, G.143, T.144 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.44, B:G.44, B:A.46, B:G.141, B:G.143, B:T.144 Water bridges: B:R.47, B:F.142, B:F.142 PO4.4: 8 residues within 4Å: Chain E: F.43, S.45, A.46, G.140, G.141, F.142, G.143, T.144 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:S.45, E:A.46, E:G.141, E:G.143, E:T.144, E:T.144 Water bridges: E:R.47, E:R.47, E:F.142, E:F.142, F:A.188 PO4.5: 8 residues within 4Å: Chain C: F.43, S.45, A.46, G.140, G.141, F.142, G.143, T.144 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:S.45, C:A.46, C:G.141, C:G.141, C:G.143, C:T.144, C:T.144 Water bridges: C:R.47, C:R.47, C:R.47, C:F.142, C:F.142 PO4.6: 8 residues within 4Å: Chain D: F.43, S.45, A.46, G.140, G.141, F.142, G.143, T.144 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:A.46, D:G.141, D:G.141, D:G.143, D:T.144, D:T.144 Water bridges: D:F.142 PO4.7: 6 residues within 4Å: Chain C: F.29, S.33, R.130, Y.131 Chain D: H.11, H.12 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:H.12, C:S.33, C:Y.131 Water bridges: D:H.12, D:E.13 Salt bridges: D:H.11, D:H.12 PO4.8: 5 residues within 4Å: Chain C: H.12 Chain D: E.30, E.34 Chain E: W.16, R.17 7 PLIP interactions: 1 interactions with chain C, 5 interactions with chain E, 1 interactions with chain D Salt bridges: C:H.12, E:R.17 Hydrogen bonds: E:W.16, E:W.16, D:E.34 Water bridges: E:R.119, E:R.119 PO4.9: 6 residues within 4Å: Chain E: H.11, H.12 Chain F: F.29, S.33, R.130, Y.131 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain E Hydrogen bonds: F:S.33, F:S.33, F:R.130, F:Y.131, E:H.12 Water bridges: E:E.13 Salt bridges: E:H.11, E:H.12 PO4.10: 5 residues within 4Å: Chain E: S.33, R.130, Y.131 Chain F: H.11, H.12 8 PLIP interactions: 3 interactions with chain E, 5 interactions with chain F Hydrogen bonds: E:Y.131, E:Y.131, F:H.12 Salt bridges: E:R.130, F:H.11, F:H.12 Water bridges: F:E.13, F:E.13 PO4.11: 6 residues within 4Å: Chain C: L.10, H.11, H.12, E.13 Chain D: S.33, R.130 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:H.12, C:E.13, C:E.13 Water bridges: C:L.10, D:Y.131 Salt bridges: C:H.11, C:H.12, D:R.130 PO4.12: 6 residues within 4Å: Chain D: Q.9, W.16, R.17 Chain E: E.30, E.34 Chain F: H.12 4 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D, 1 interactions with chain F Hydrogen bonds: E:E.30, D:Q.9 Salt bridges: D:R.17, F:H.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kukimoto-Niino, M. et al., Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8. Protein Sci. (2004)

Release Date

2004-11-25

Peptides

hypothetical protein TT1465: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

hypothetical protein TT1465