SMTL ID : 1wfx.2 (1 other biounit)

Crystal Structure of APE0204 from Aeropyrum pernix

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.58 Chain B: H.58 Chain C: H.58 Ligands: ZN.7, ZN.13 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.58, B:H.58, A:H.58, H2O.16, H2O.32 ZN.7: 5 residues within 4Å: Chain A: H.58 Chain B: H.58 Chain C: H.58 Ligands: ZN.1, ZN.13 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.58, B:H.58, A:H.58, H2O.16, H2O.32 ZN.13: 5 residues within 4Å: Chain A: H.58 Chain B: H.58 Chain C: H.58 Ligands: ZN.1, ZN.7 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.58, B:H.58, A:H.58, H2O.16, H2O.32

15 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: R.14, K.61, R.63, Y.75, R.116 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: H.16, R.19 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.14, H.15, R.115, R.116 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.116, H.120 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.158 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: R.14, K.61, R.63, Y.75, R.116 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: H.16, R.19 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: R.14, H.15, R.115, R.116 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: R.116, H.120 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain B: R.158 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain C: R.14, K.61, R.63, Y.75, R.116 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain C: H.16, R.19 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain C: R.14, H.15, R.115, R.116 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain C: R.116, H.120 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain C: R.158 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kato-Murayama, M. et al., Crystal Structure of the RNA 2'-Phosphotransferase from Aeropyrum pernix K1. J.Mol.Biol. (2005)

Release Date

2004-11-27

Peptides

Probable RNA 2'-phosphotransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Probable RNA 2'-phosphotransferase

Related Entries With Identical Sequence