SMTL ID : 1wmg.1

Crystal structure of the UNC5H2 death domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

7 x SO3: SULFITE ION(Non-covalent)

SO3.1: 1 residues within 4Å: Chain A: R.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.30 SO3.2: 2 residues within 4Å: Chain C: N.28, N.32 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.28 SO3.3: 5 residues within 4Å: Chain C: Q.39, S.42, M.43, D.44, R.45 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.39, C:D.44, C:R.45, C:R.45, C:R.45 Salt bridges: C:D.44 SO3.5: 4 residues within 4Å: Chain D: N.28, R.30, N.32, K.86 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.28, D:R.30, D:K.86, D:K.86 SO3.6: 3 residues within 4Å: Chain D: S.23, K.86, E.88 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.23 Salt bridges: D:E.88 SO3.7: 4 residues within 4Å: Chain E: S.42, M.43, D.44, R.45 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:D.44, E:R.45, E:R.45, E:R.45 Salt bridges: E:D.44 SO3.8: 3 residues within 4Å: Chain E: P.13, L.14, S.15 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:L.14, E:S.15

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain C: W.64, R.67, Q.68, S.76 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:W.64, C:Q.68, C:S.76 Salt bridges: C:R.67 SO4.9: 4 residues within 4Å: Chain E: W.64, R.67, Q.68, S.76 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.68, E:S.76, E:S.76 Salt bridges: E:R.67 SO4.10: 4 residues within 4Å: Chain F: W.64, R.67, Q.68, S.76 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Q.68, F:S.76 Salt bridges: F:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Handa, N. et al., Structure of the UNC5H2 death domain. ACTA CRYSTALLOGR.,SECT.D (2006)

Release Date

2005-01-09

Peptides

netrin receptor Unc5h2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

netrin receptor Unc5h2