SMTL ID : 1wnb.2 (1 other biounit)

Escherichia coli YdcW gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

1 x BTL: BETAINE ALDEHYDE(Non-covalent)

BTL.1: 5 residues within 4Å: Chain A: Y.171, D.300, T.302, F.457, L.459 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.300 pi-Cation interactions: A:F.457

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.2: 27 residues within 4Å: Chain A: I.166, A.167, P.168, W.169, N.170, K.193, P.194, S.195, E.196, G.225, G.229, D.230, T.233, L.243, T.244, G.245, S.246, T.249, H.252, I.253, E.267, G.269, C.301, H.348, R.351, E.399, F.401 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:P.168, A:W.169 Hydrogen bonds: A:A.167, A:N.170, A:K.193, A:E.196, A:G.225, A:D.230, A:D.230, A:S.246, A:T.249, A:T.249, A:H.252, A:E.267, A:H.348 Salt bridges: A:R.351 pi-Stacking: A:F.401 NAI.3: 19 residues within 4Å: Chain B: I.166, A.167, W.169, K.193, P.194, S.195, E.196, R.224, G.225, K.226, G.229, D.230, T.233, L.243, G.245, S.246, T.249, H.252, I.253 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:A.167, B:W.169, B:K.193, B:E.196, B:D.230, B:S.246, B:H.252 Water bridges: B:R.224, B:D.230 NAI.4: 27 residues within 4Å: Chain C: I.166, A.167, P.168, W.169, N.170, K.193, P.194, S.195, E.196, G.225, G.229, D.230, L.243, T.244, G.245, S.246, T.249, H.252, I.253, E.267, L.268, G.269, C.301, H.348, R.351, E.399, F.401 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:W.169 Hydrogen bonds: C:A.167, C:N.170, C:K.193, C:E.196, C:D.230, C:S.246, C:H.252, C:H.348, C:R.351, C:R.351 Water bridges: C:G.225, C:D.230, C:D.230, C:S.246 Salt bridges: C:R.351 pi-Stacking: C:F.401 NAI.5: 26 residues within 4Å: Chain D: I.166, A.167, P.168, W.169, N.170, K.193, P.194, S.195, E.196, G.225, G.229, D.230, T.233, L.243, T.244, G.245, S.246, T.249, H.252, I.253, L.268, G.269, H.348, R.351, E.399, F.401 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:A.167, D:W.169, D:W.169, D:N.170, D:N.170, D:K.193, D:E.196, D:G.225, D:D.230, D:S.246, D:T.249, D:T.249, D:R.351 Salt bridges: D:R.351 pi-Stacking: D:F.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruez, A. et al., Crystal Structure and Kinetics Identify Escherichia coli YdcW Gene Product as a Medium-chain Aldehyde Dehydrogenase. J.Mol.Biol. (2004)

Release Date

2004-10-05

Peptides

Putative betaine aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

Putative betaine aldehyde dehydrogenase

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